| ScalaBLAST: a scalable implementation of BLAST for high-performance data-intensive bioinformatics analysis C Oehmen, J Nieplocha IEEE Transactions on Parallel and Distributed Systems 17 (8), 740-749, 2006 | 212 | 2006 |
| Computational prediction of type III and IV secreted effectors in gram-negative bacteria JE McDermott, A Corrigan, E Peterson, C Oehmen, G Niemann, ... Infection and immunity 79 (1), 23-32, 2011 | 135 | 2011 |
| ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems CS Oehmen, DJ Baxter Bioinformatics 29 (6), 797-798, 2013 | 88 | 2013 |
| Inhibition of dengue virus infections in cell cultures and in AG129 mice by a small interfering RNA targeting a highly conserved sequence DA Stein, ST Perry, MD Buck, CS Oehmen, MA Fischer, E Poore, JL Smith, ... Journal of virology 85 (19), 10154-10166, 2011 | 67 | 2011 |
| A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics BJM Webb-Robertson, WR Cannon, CS Oehmen, AR Shah, ... Bioinformatics 24 (13), 1503-1509, 2008 | 62 | 2008 |
| SVM-HUSTLE—an iterative semi-supervised machine learning approach for pairwise protein remote homology detection AR Shah, CS Oehmen, BJ Webb-Robertson Bioinformatics 24 (6), 783-790, 2008 | 62 | 2008 |
| A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics BJM Webb-Robertson, WR Cannon, CS Oehmen, AR Shah, ... Bioinformatics 26 (13), 1677-1683, 2010 | 50 | 2010 |
| Comparison of probability and likelihood models for peptide identification from tandem mass spectrometry data WR Cannon, KH Jarman, BJM Webb-Robertson, DJ Baxter, CS Oehmen, ... Journal of Proteome Research 4 (5), 1687-1698, 2005 | 41 | 2005 |
| Physicochemical property distributions for accurate and rapid pairwise protein homology detection BJM Webb-Robertson, KG Ratuiste, CS Oehmen BMC bioinformatics 11 (1), 1-8, 2010 | 32 | 2010 |
| Biomolecular computation in virtual test tubes MH Garzon, C Oehmen DNA Computing: 7th International Workshop on DNA-Based Computers, DNA7 Tampa …, 2002 | 31 | 2002 |
| SVM-BALSA: remote homology detection based on Bayesian sequence alignment BJ Webb-Robertson, C Oehmen, M Matzke Computational Biology and Chemistry 29 (6), 440-443, 2005 | 29 | 2005 |
| Mathematical Model of the Rapidly Activating Delayed Rectifier Potassium Current IKr in Rabbit Sinoatrial Node CS Oehmen, WR Giles, SS Demir Journal of cardiovascular electrophysiology 13 (11), 1131-1140, 2002 | 27 | 2002 |
| A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142 JE McDermott, CS Oehmen, LA McCue, E Hill, DM Choi, J Stöckel, ... Molecular bioSystems 7 (8), 2407-2418, 2011 | 26 | 2011 |
| Defending our public biological databases as a global critical infrastructure J Caswell, JD Gans, N Generous, CM Hudson, E Merkley, C Johnson, ... Frontiers in bioengineering and biotechnology 7, 58, 2019 | 17 | 2019 |
| Formal approach for resilient reachability based on end-system route agility U Rauf, F Gillani, E Al-Shaer, M Halappanavar, S Chatterjee, C Oehmen Proceedings of the 2016 ACM Workshop on Moving Target Defense, 117-127, 2016 | 17 | 2016 |
| An organic model for detecting cyber-events C Oehmen, E Peterson, S Dowson Proceedings of the Sixth Annual Workshop on Cyber Security and Information …, 2010 | 16 | 2010 |
| Proactive routing mutation against stealthy Distributed Denial of Service attacks: metrics, modeling, and analysis Q Duan, E Al-Shaer, S Chatterjee, M Halappanavar, C Oehmen The Journal of Defense Modeling and Simulation 15 (2), 219-230, 2018 | 15 | 2018 |
| A feature vector integration approach for a generalized support vector machine pairwise homology algorithm BJM Webb-Robertson, CS Oehmen, AR Shah Computational Biology and Chemistry 32 (6), 458-461, 2008 | 9 | 2008 |
| LINEBACkER: Bio-inspired data reduction toward real time network traffic analysis J Teuton, E Peterson, D Nordwall, B Akyol, C Oehmen 2013 6th International Symposium on Resilient Control Systems (ISRCS), 170-174, 2013 | 8 | 2013 |
| Evolutionary drift models for moving target defense C Oehmen, E Peterson, J Teuton Proceedings of the Eighth Annual Cyber Security and Information Intelligence …, 2013 | 8 | 2013 |
Bobbie-Jo Webb-RobertsonSenior Research Scientist, Pacific Northwest National LaboratoryVerified email at pnnl.gov
