Valentine Svensson

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Sarah A. TeichmannUniversity of CambridgeVerified email at cam.ac.uk
Lior PachterBren Professor of Computational Biology, CaltechVerified email at caltech.edu
Tapio LönnbergUniversity of TurkuVerified email at utu.fi
Kedar Nath NatarajanWellcome Trust Sanger Institute, European Bioinformatics InstituteVerified email at sanger.ac.uk
Megan SF SoonQIMR Berghofer Medical Research Institute, University of QueenslandVerified email at uqconnect.edu.au
Kylie Renee JamesGarvan Institute of Medical ResearchVerified email at garvan.org.au
Oliver BillkerUmeå UniversityVerified email at umu.se
Oliver StegleGerman Cancer Research Center (DKFZ) & EMBL HeidelbergVerified email at dkfz.de
Michael StubbingtonCS GeneticsVerified email at csgenetics.com
Ashraful HaqueLaboratory Head; Dept of Microbiology & Immunology, Doherty Institute, Uni. of Melbourne,Verified email at unimelb.edu.au
Lam-Ha LyPhD student at Max Planck Institute for Molecular GeneticsVerified email at molgen.mpg.de
Ricardo J MiragaiaAssociate Director, AstraZenecaVerified email at astrazeneca.com
Fernando Souza-Fonseca-GuimaraesLab head, University of Queensland Frazer InstituteVerified email at uq.edu.au
Ismail SebinaPhDVerified email at qimrberghofer.edu.au
Roser Vento-TormoWellcome Sanger InstituteVerified email at sanger.ac.uk
Iain MacaulayEarlham InstituteVerified email at earlham.ac.uk
John MarioniGenentechVerified email at gene.com
Jong Kyoung KimAssociate Professor, Department of Life Sciences, POSTECHVerified email at postech.ac.kr
Aleksandra A KolodziejczykInternational Institute of Molecular and Cell BiologyVerified email at iimcb.gov.pl
Neil D. LawrenceUniversity of CambridgeVerified email at cl.cam.ac.uk

Valentine Svensson

Altos Labs

Verified email at altoslabs.com - Homepage

Immunology Cell biology Gene regulation Probabilistic and statistical modelling


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The technology and biology of single-cell RNA sequencing AA Kolodziejczyk, JK Kim, V Svensson, JC Marioni, SA Teichmann Molecular cell 58 (4), 610-620, 2015	1470	2015
Exponential scaling of single-cell RNA-seq in the past decade V Svensson, R Vento-Tormo, SA Teichmann Nature protocols 13 (4), 599-604, 2018	1032	2018
Power Analysis of Single Cell RNA‐Sequencing Experiments V Svensson, KN Natarajan, LH Ly, RJ Miragaia, C Labalette, IC Macaulay, ... Nature Methods 14 (4), 381-387, 2017	646	2017
SpatialDE: identification of spatially variable genes V Svensson, SA Teichmann, O Stegle Nature Methods 15 (5), 343, 2018	522	2018
A Python library for probabilistic analysis of single-cell omics data A Gayoso, R Lopez, G Xing, P Boyeau, V Valiollah Pour Amiri, J Hong, ... Nature biotechnology 40 (2), 163-166, 2022	427	2022
Droplet scRNA-seq is not zero-inflated V Svensson Nature Biotechnology 38 (2), 147-150, 2020	357	2020
A multimodal cell census and atlas of the mammalian primary motor cortex Principal manuscript editors, Analysis coordination, ... Nature 598 (7879), 86-102, 2021	344	2021
Single-cell RNA-seq and computational analysis using temporal mixture modeling resolves T_H1/T_FH fate bifurcation in malaria T Lönnberg, V Svensson, KR James, D Fernandez-Ruiz, I Sebina, ... Science immunology 2 (9), eaal2192, 2017	303	2017
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ... Nature 598 (7879), 103-110, 2021	266	2021
A curated database reveals trends in single-cell transcriptomics V Svensson, E da Veiga Beltrame, L Pachter Database 2020, baaa073, 2020	225	2020
Single-cell RNA-sequencing reveals a continuous spectrum of differentiation in hematopoietic cells IC Macaulay, V Svensson, C Labalette, L Ferreira, F Hamey, T Voet, ... Cell reports 14 (4), 966-977, 2016	216	2016
MERVL/Zscan4 network activation results in transient genome-wide DNA demethylation of mESCs MA Eckersley-Maslin, V Svensson, C Krueger, TM Stubbs, P Giehr, ... Cell Reports 17 (1), 179-192, 2016	213	2016
Interpretable factor models of single-cell RNA-seq via variational autoencoders V Svensson, A Gayoso, N Yosef, L Pachter Bioinformatics 36 (11), 3418-3421, 2020	177	2020
Computational approaches for interpreting sc RNA‐seq data R Rostom, V Svensson, SA Teichmann, G Kar FEBS letters 591 (15), 2213-2225, 2017	127	2017
An atlas of mouse CD4⁺ T cell transcriptomes MJT Stubbington, B Mahata, V Svensson, A Deonarine, JK Nissen, ... Biology direct 10, 1-25, 2015	106	2015
Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition M Oatley, ÖV Bölükbası, V Svensson, M Shvartsman, K Ganter, K Zirngibl, ... Nature communications 11 (1), 586, 2020	93	2020
Protein velocity and acceleration from single-cell multiomics experiments G Gorin, V Svensson, L Pachter Genome biology 21, 1-6, 2020	85	2020
Single-cell analysis at the threshold X Chen, JC Love, NE Navin, L Pachter, MJT Stubbington, V Svensson, ... Nature biotechnology 34 (11), 1111-1118, 2016	76	2016
Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation V Proserpio, A Piccolo, L Haim-Vilmovsky, G Kar, T Lönnberg, ... Genome biology 17, 1-15, 2016	69	2016
RNA velocity: molecular kinetics from single-cell RNA-Seq V Svensson, L Pachter Molecular cell 72 (1), 7-9, 2018	66	2018

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