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Matthew Holcomb
Matthew Holcomb
Verified email at scripps.edu
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Year
Progress toward a semi-synthetic organism with an unrestricted expanded genetic alphabet
VT Dien, M Holcomb, AW Feldman, EC Fischer, TJ Dwyer, FE Romesberg
Journal of the American Chemical Society 140 (47), 16115-16123, 2018
452018
Copper-catalyzed chan–lam cyclopropylation of phenols and azaheterocycles
J Derosa, ML O’Duill, M Holcomb, MN Boulous, RL Patman, F Wang, ...
The Journal of organic chemistry 83 (7), 3417-3425, 2018
342018
Evaluation of AlphaFold2 structures as docking targets
M Holcomb, YT Chang, DS Goodsell, S Forli
Protein Science 32 (1), e4530, 2023
332023
Orphan receptor GPR158 serves as a metabotropic glycine receptor: mGlyR
T Laboute, S Zucca, M Holcomb, DN Patil, C Garza, BA Wheatley, RN Roy, ...
Science 379 (6639), 1352-1358, 2023
152023
Topological Evidence of Previously Overlooked Ni+1–H···Ni H-Bonds and Their Contribution to Protein Structure and Stability
M Holcomb, R Adhikary, J Zimmermann, FE Romesberg
The Journal of Physical Chemistry A 122 (1), 446-450, 2018
142018
Conformational heterogeneity and DNA recognition by the morphogen bicoid
R Adhikary, YX Tan, J Liu, J Zimmermann, M Holcomb, C Yvellez, ...
Biochemistry 56 (22), 2787-2793, 2017
122017
Eight-letter DNA
VT Dien, M Holcomb, FE Romesberg
Biochemistry 58 (22), 2581-2583, 2019
102019
Initial analysis of the arylomycin D antibiotics
YX Tan, DS Peters, SI Walsh, M Holcomb, D Santos-Martins, S Forli, ...
Journal of Natural Products 83 (7), 2112-2121, 2020
92020
Stretching peptides to generate small molecule β-strand mimics
ZC Adams, AP Silvestri, S Chiorean, DT Flood, BP Balo, Y Shi, ...
ACS Central Science 9 (4), 648-656, 2023
52023
Direct observation of peptide hydrogel self-assembly
ZC Adams, EJ Olson, TL Lopez-Silva, Z Lian, AY Kim, M Holcomb, ...
Chemical science 13 (34), 10020-10028, 2022
52022
Performance evaluation of flexible macrocycle docking in AutoDock
M Holcomb, D Santos-Martins, AF Tillack, S Forli
QRB discovery 3, e18, 2022
32022
Reactive Docking: a computational method for high-throughput virtual screenings of reactive species
G Bianco, M Holcomb, D Santos-Martins, A Tillack, A Hansel-Harris, ...
Journal of Chemical Information and Modeling 63 (17), 5631-5640, 2023
12023
Synergy of machine learning and density functional theory calculations for predicting experimental Lewis base affinity and Lewis polybase binding atoms
H Huynh, K Le, L Vu, T Nguyen, M Holcomb, S Forli, H Phan
Journal of Computational Chemistry, 2024
2024
IP6 and PF74 affect HIV-1 Capsid Stability through Modulation of Hexamer-Hexamer Tilt Angle Preference
CM Garza, M Holcomb, D Santos-Martins, BE Torbett, S Forli
bioRxiv, 2024.03. 11.584513, 2024
2024
Ringtail: a Python tool for efficient management and storage of virtual screening results
AT Hansel-Harris, D Santos-Martins, N Bruciaferri, AF Tillack, M Holcomb, ...
Journal of Chemical Information and Modeling 63 (7), 1858-1864, 2023
2023
Stretching Peptides
ZC Adams, AP Silvestri, S Chiorean, BP Balo, Y Shi, M Holcomb, SI Walsh, ...
2022
Direct Observation of MAX1 Self‐Assembly via Site‐Specific Carbon‐Deuterium Infrared Probes
Z Adams, E Olson, Z Lian, M Holcomb, R Adhikary, J Zimmermann, ...
The FASEB Journal 35, 2021
2021
Characterization of Stereoelectronic Forces in Protein Backbones and Docking of Macrocyclic Peptide Beta Strand Mimics
M Holcomb
The Scripps Research Institute, 2021
2021
Topological Evidence of Previously Overlooked N&ITi&IT+ 1-H center dot center dot center dot N&ITi&IT H-Bonds and Their Contribution to Protein Structure and Stability
M Holcomb, R Adhikary, J Zimmermann, FE Romesberg
Journal of Physical Chemistry A 122 (1), 446-450, 2018
2018
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Articles 1–19