Marco Antoniotti

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Citations	2172	901
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Bud MishraProfessor of Computer Science and MathematicsVerified email at nyu.edu
Alex GraudenziDept. of Informatics, Systems and Communication, Univ. of Milan-BicoccaVerified email at unimib.it
Giancarlo MauriProfessor of Computer Science - University of Milano-BicoccaVerified email at disco.unimib.it
Giulio CaravagnaCancer Data Science Laboratory, University of TriesteVerified email at units.it
Daniele RamazzottiDepartment of Medicine and Surgery, University of Milano-Bicocca, Milano, ItalyVerified email at unimib.it
Davide MasperoSingle Cell Genomics Team - Centre Nacional d’Anàlisi Genòmica (CNAG-CRG), Barcelona, SpainVerified email at cnag.crg.eu
Alberto PolicritiUniversity of UdineVerified email at uniud.it
Luca De SanoUniversità degli Studi di Milano BicoccaVerified email at campus.unimib.it
Naren RamakrishnanThomas L. Phillips Professor of Engineering, Virginia Tech and Director, @SanghaniCtrVTVerified email at cs.vt.edu
Rocco PiazzaUniversity of Milano-BicoccaVerified email at unimib.it
Italo ZoppisDipartimento di Informatica, Sistemistica e Comunicazione, Università degli Studi di Milano-BicoccaVerified email at unimib.it
Carla PiazzaProfessor of Computer Science, University of UdineVerified email at uniud.it
Chiara DamianiDepartment of Biotechnology and BiosciencesVerified email at unimib.it
Loes Olde LoohuisAssistant professor at UCLAVerified email at mednet.ucla.edu
De Matteis GiovanniDepartment of Mathematics and Information Sciences, Northumbria University, NewcastleVerified email at unipv.it
Daniele MericoDeep Genomics Inc.Verified email at deepgenomics.com
Claudia CavaIBFM-CNRVerified email at ibfm.cnr.it
Isabella CastiglioniResearcher, IBFM CNRVerified email at ibfm.cnr.it
Flavio De PaoliUniversità di Milano-BicoccaVerified email at disco.unimib.it
Alain GiraultINRIAVerified email at inria.fr

Marco Antoniotti

Professor of Computer Science, Università degli Studi di Milano-Bicocca

Verified email at unimib.it - Homepage

Computational Biology Bioinformatics Computer Science Machine Learning


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Model building and model checking for biochemical processes M Antoniotti, A Policriti, N Ugel, B Mishra Cell biochemistry and biophysics 38, 271-286, 2003	145	2003
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular Systems Biology 16 (8), e9110, 2020	124	2020
A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ... Cell systems 7 (4), 422-437. e7, 2018	113	2018
Algorithmic algebraic model checking I: Challenges from systems biology C Piazza, M Antoniotti, V Mysore, A Policriti, F Winkler, B Mishra Computer Aided Verification: 17th International Conference, CAV 2005 …, 2005	98	2005
Discrete event models+ temporal logic= supervisory controller: Automatic synthesis of locomotion controllers M Antoniotti, B Mishra Proceedings of 1995 IEEE International Conference on Robotics and Automation …, 1995	98	1995
CAPRI: efficient inference of cancer progression models from cross-sectional data D Ramazzotti, G Caravagna, L Olde Loohuis, A Graudenzi, I Korsunsky, ... Bioinformatics 31 (18), 3016-3026, 2015	87	2015
Algorithmic methods to infer the evolutionary trajectories in cancer progression G Caravagna, A Graudenzi, D Ramazzotti, R Sanz-Pamplona, L De Sano, ... PNAS 113 (28), E4025-E4034, 2016	81	2016
From bytes to bedside: data integration and computational biology for translational cancer research JP Mathew, BS Taylor, GD Bader, S Pyarajan, M Antoniotti, ... PLoS computational biology 3 (2), e12, 2007	80	2007
Inferring Tree Causal Models of Cancer Progression with Probability Raising L Olde Loohuis, G Caravagna, A Graudenzi, D Ramazzotti, G Mauri, ... PLoS ONE, 2014	63	2014
Foundations of a query and simulation system for the modeling of biochemical and biological processes M Antoniotti, F Park, A Policriti, N Ugel, B Mishra Biocomputing 2003, 116-127, 2002	58	2002
A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development G De Matteis, A Graudenzi, M Antoniotti Journal of mathematical biology 66 (7), 1409-1462, 2013	57	2013
Taming the complexity of biochemical models through bisimulation and collapsing: theory and practice M Antoniotti, C Piazza, A Policriti, M Simeoni, B Mishra Theoretical Computer Science 325 (1), 45-67, 2004	54	2004
A comparison of machine learning techniques for survival prediction in breast cancer L Vanneschi, A Farinaccio, G Mauri, M Antoniotti, P Provero, M Giacobini BioData mining 4 (1), 1-13, 2011	53	2011
Synthesis and verification of discrete controllers for robotics and manufacturing devices with temporal logic and the Control-D system M Antoniotti New York University, 1995	49	1995
SHIFT and SMART-AHS: A Language for Hybrid System Engineering Modeling and Simulation. M Antoniotti, A Göllü DSL 97, 14-14, 1997	46	1997
Method, system and software arrangement for reconstructing formal descriptive models of processes from functional/modal data using suitable ontology B Mishra, M Antoniotti, N Ramakrishnan US Patent 7,801,841, 2010	41	2010
TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data L De Sano, G Caravagna, D Ramazzotti, A Graudenzi, G Mauri, B Mishra, ... biorxiv.org, 2015	40	2015
Microsimulation analysis of multiple merge junctions under autonomous AHS operation M Antoniotti, A Desphande, A Girault Proceedings of Conference on Intelligent Transportation Systems, 147-152, 1997	39	1997
Modeling cellular behavior with hybrid automata: Bisimulation and collapsing M Antoniotti, B Mishra, C Piazza, A Policriti, M Simeoni Computational Methods in Systems Biology: First International Workshop, CMSB …, 2003	38	2003
XS-systems: extended s-systems and algebraic differential automata for modeling cellular behavior M Antoniotti, A Policriti, N Ugel, B Mishra High Performance Computing—HiPC 2002: 9th International Conference …, 2002	38	2002

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