| A Hybrid Stochastic Model of the Budding Yeast Cell Cycle M Ahmadian, JJ Tyson, J Peccoud, Y Cao npj Systems Biology and Applications 6 (7), 2020 | 12 | 2020 |
| A hybrid stochastic model of the budding yeast cell cycle control mechanism S Wang, M Ahmadian, M Chen, JJ Tyson, Y Cao Proceedings of the 7th ACM International Conference on Bioinformatics …, 2016 | 12 | 2016 |
| A Stochastic Model of Size Control in the Budding Yeast Cell Cycle M Ahmadian, JJ Tyson, C Yang Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018 | 9 | 2018 |
| Hybrid ODE/SSA Model of the Budding Yeast Cell Cycle Control Mechanism with Mutant Case Study M Ahmadian, S Wang, JJ Tyson, Y Cao Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | 7 | 2017 |
| Dynamical analysis of the fission yeast cell cycle via Markov chain S Shafiekhani, P Kraikivski, N Gheibi, M Ahmadian, AH Jafari Current Genetics 67, 785–797, 2021 | 6 | 2021 |
| FunSpace: A functional and spatial analytic approach to cell imaging data using entropy measures T Vu, S Seal, T Ghosh, M Ahmadian, J Wrobel, D Ghosh PLOS Computational Biology 19 (9), e1011490, 2023 | 1 | 2023 |
| A platform-independent framework for phenotyping of multiplex tissue imaging data M Ahmadian, C Rickert, A Minic, J Wrobel, BG Bitler, F Xing, M Angelo, ... PLoS Computational Biology 19 (9), e1011432, 2023 | 1 | 2023 |
| The spatial structure of the tumor immune microenvironment can explain and predict patient response in high-grade serous carcinoma L Van Kleunen, M Ahmadian, MD Post, RJ Wolsky, C Rickert, K Jordan, ... bioRxiv, 2024 | | 2024 |
| Hybrid Modeling and Simulation of Stochastic Effects on Biochemical Regulatory Networks M Ahmadian Virginia Tech, 2020 | | 2020 |
| Supplementary Information A Hybrid Stochastic Model of the Budding Yeast Cell Cycle M Ahmadian, JJ Tyson, J Peccoud, Y Cao npj Systems Biology and Applications 6 (7), 2020 | | 2020 |
| Finding acceptable parameter regions of stochastic Hill functions for multisite phosphorylation mechanism M Chen, M Ahmadian, L Watson, Y Cao The Journal of Chemical Physics 152 (12), 124108, 2020 | | 2020 |
| A stochastic model of size control in the budding yeast cell cycle M Ahmadian, JJ Tyson, C Yang BMC Bioinformatics 20 (12), 322, 2019 | | 2019 |
John J. TysonDepartment of Biological Sciences, Virginia TechVerified email at vt.edu
