Alla Mikheenko
Alla Mikheenko
Center for Algorithmic Biotechnology, St. Petersburg State University
Verified email at spbu.ru
Title
Cited by
Cited by
Year
MetaQUAST: evaluation of metagenome assemblies
A Mikheenko, V Saveliev, A Gurevich
Bioinformatics 32 (7), 1088-1090, 2016
2942016
Versatile genome assembly evaluation with QUAST-LG
A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich
Bioinformatics 34 (13), i142-i150, 2018
2912018
Dereplication of peptidic natural products through database search of mass spectra
H Mohimani, A Gurevich, A Mikheenko, N Garg, LF Nothias, A Ninomiya, ...
Nature chemical biology 13 (1), 30-37, 2017
1512017
Dereplication of microbial metabolites through database search of mass spectra
H Mohimani, A Gurevich, A Shlemov, A Mikheenko, A Korobeynikov, ...
Nature communications 9 (1), 1-12, 2018
1222018
Icarus: visualizer for de novo assembly evaluation
A Mikheenko, G Valin, A Prjibelski, V Saveliev, A Gurevich
Bioinformatics 32 (21), 3321-3323, 2016
662016
The structure, function and evolution of a complete human chromosome 8
GA Logsdon, MR Vollger, PH Hsieh, Y Mao, MA Liskovykh, S Koren, ...
Nature 593 (7857), 101-107, 2021
572021
Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra
A Gurevich, A Mikheenko, A Shlemov, A Korobeynikov, H Mohimani, ...
Nature microbiology 3 (3), 319-327, 2018
542018
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
bioRxiv, 2021
512021
MetaMiner: a scalable peptidogenomics approach for discovery of ribosomal peptide natural products with blind modifications from microbial communities
L Cao, A Gurevich, KL Alexander, CB Naman, T Leão, E Glukhov, ...
Cell systems 9 (6), 600-608. e4, 2019
282019
TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats
A Mikheenko, AV Bzikadze, A Gurevich, KH Miga, PA Pevzner
Bioinformatics 36 (Supplement_1), i75-i83, 2020
22*2020
A circuit synthesis technique based on network determinant expansion
V Filaretov, K Gorshkov, A Mikheenko
2012 International Conference on Synthesis, Modeling, Analysis and …, 2012
192012
Complete genomic and epigenetic maps of human centromeres
N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ...
bioRxiv, 2021
82021
Extending rnaSPAdes functionality for hybrid transcriptome assembly
AD Prjibelski, GD Puglia, D Antipov, E Bushmanova, D Giordano, ...
BMC bioinformatics 21 (12), 1-9, 2020
82020
Assembly Graph Browser: interactive visualization of assembly graphs
A Mikheenko, M Kolmogorov
Bioinformatics 35 (18), 3476-3478, 2019
82019
MetaRiPPquest: a peptidogenomics approach for the discovery of ribosomally synthesized and post-translationally modified peptides
H Mohimani, A Gurevich, KL Alexander, CB Naman, T Leao, E Glukhov, ...
BioRxiv, 227504, 2017
42017
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies
AM Mc Cartney, K Shafin, M Alonge, AV Bzikadze, G Formenti, ...
biorxiv, 2021
22021
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies
A Rhie, A Mc Cartney, K Shafin, M Alonge, A Bzikadze, G Formenti, ...
2021
Single-nuclei isoform RNA sequencing reveals combination patterns of transcript elements across human brain cell types
SA Hardwick, W Hu, A Joglekar, L Fan, PG Collier, C Foord, J Balacco, ...
bioRxiv, 2021
2021
The structure, function, and evolution of a complete human chromosome 8
E Eichler, G Logsdon, M Vollger, PH Hsieh, Y Mao, M Liskovykh, S Koren, ...
2020
TASK DRIVEN CONVERSION OF THE SPADES GENOME ASSEMBLER INTO A FAMILY OF SPADES TOOLS
A Lapidus, A Korobeynikov, D Antipov, A Bankevich, E Bushmanova, ...
Высокопроизводительное секвенирование в геномике, 26-26, 2017
2017
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Articles 1–20