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Xiaogen Zhou
Xiaogen Zhou
Zhejiang University of Technology
Verified email at umich.edu - Homepage
Title
Cited by
Cited by
Year
Protein structure and sequence reanalysis of 2019-nCoV genome refutes snakes as its intermediate host and the unique similarity between its spike protein insertions and HIV-1
C Zhang, W Zheng, X Huang, EW Bell, X Zhou, Y Zhang
Journal of proteome research 19 (4), 1351-1360, 2020
3622020
I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction
X Zhou, W Zheng, Y Li, R Pearce, C Zhang, EW Bell, G Zhang, Y Zhang
Nature Protocols 17 (10), 2326-2353, 2022
1532022
Assembling multidomain protein structures through analogous global structural alignments
X Zhou, J Hu, C Zhang, G Zhang, Y Zhang
Proceedings of the National Academy of Sciences 116 (32), 15930-15938, 2019
1032019
Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks
Y Li, C Zhang, EW Bell, W Zheng, X Zhou, DJ Yu, Y Zhang
PLoS computational biology 17 (3), e1008865, 2021
822021
Protein structure prediction using deep learning distance and hydrogen‐bonding restraints in CASP14
W Zheng, Y Li, C Zhang, X Zhou, R Pearce, EW Bell, X Huang, Y Zhang
Proteins: Structure, Function, and Bioinformatics 89 (12), 1734-1751, 2021
562021
Differential evolution with underestimation-based multimutation strategy
XG Zhou, GJ Zhang
IEEE transactions on cybernetics 49 (4), 1353-1364, 2018
562018
TargetDBP: accurate DNA-binding protein prediction via sequence-based multi-view feature learning
J Hu, XG Zhou, YH Zhu, DJ Yu, GJ Zhang
IEEE/ACM transactions on computational biology and bioinformatics 17 (4 …, 2019
532019
Underestimation-assisted global-local cooperative differential evolution and the application to protein structure prediction
XG Zhou, CX Peng, J Liu, Y Zhang, GJ Zhang
IEEE transactions on evolutionary computation 24 (3), 536-550, 2019
522019
FUpred: detecting protein domains through deep-learning-based contact map prediction
W Zheng, X Zhou, Q Wuyun, R Pearce, Y Li, Y Zhang
Bioinformatics 36 (12), 3749-3757, 2020
502020
Secondary structure and contact guided differential evolution for protein structure prediction
GJ Zhang, LF Ma, XQ Wang, XG Zhou
IEEE/ACM transactions on computational biology and bioinformatics 17 (3 …, 2018
502018
Abstract convex underestimation assisted multistage differential evolution
XG Zhou, GJ Zhang
IEEE transactions on cybernetics 47 (9), 2730-2741, 2017
482017
Enhancing protein conformational space sampling using distance profile-guided differential evolution
GJ Zhang, XG Zhou, XF Yu, XH Hao, L Yu
IEEE/ACM transactions on computational biology and bioinformatics 14 (6 …, 2016
362016
Progressive assembly of multi-domain protein structures from cryo-EM density maps
X Zhou, Y Li, C Zhang, W Zheng, G Zhang, Y Zhang
Nature Computational Science 2 (3), 265-275, 2022
352022
A novel differential evolution algorithm using local abstract convex underestimate strategy for global optimization
X Zhou, G Zhang, X Hao, L Yu
Computers & Operations Research 75, 132-149, 2016
342016
DeepUMQA: ultrafast shape recognition-based protein model quality assessment using deep learning
SS Guo, J Liu, XG Zhou, GJ Zhang
Bioinformatics 38 (7), 1895-1903, 2022
322022
CGLFold: a contact-assisted de novo protein structure prediction using global exploration and loop perturbation sampling algorithm
J Liu, XG Zhou, Y Zhang, GJ Zhang
Bioinformatics 36 (8), 2443-2450, 2020
302020
Protein structure and folding pathway prediction based on remote homologs recognition using PAthreader
K Zhao, Y Xia, F Zhang, X Zhou, SZ Li, G Zhang
Communications biology 6 (1), 243, 2023
242023
LOMETS3: Integrating deep learning and profile alignment for advanced protein template recognition and function annotation
W Zheng, Q Wuyun, X Zhou, Y Li, PL Freddolino, Y Zhang
Nucleic acids research 50 (W1), W454-W464, 2022
232022
Protein inter‐residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14
Y Li, C Zhang, W Zheng, X Zhou, EW Bell, DJ Yu, Y Zhang
Proteins: Structure, Function, and Bioinformatics 89 (12), 1911-1921, 2021
222021
MMpred: a distance-assisted multimodal conformation sampling for de novo protein structure prediction
KL Zhao, J Liu, XG Zhou, JZ Su, Y Zhang, GJ Zhang
Bioinformatics 37 (23), 4350-4356, 2021
202021
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Articles 1–20