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Yuchun Guo
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Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
11362020
High resolution genome wide binding event finding and motif discovery reveals transcription factor spatial binding constraints
Y Guo, S Mahony, DK Gifford
Public Library of Science 8 (8), e1002638, 2012
3172012
High-throughput mapping of regulatory DNA
N Rajagopal, S Srinivasan, K Kooshesh, Y Guo, MD Edwards, B Banerjee, ...
Nature biotechnology 34 (2), 167-174, 2016
2652016
Evidence by molecular profiling for a placental origin of infantile hemangioma
CM Barnés, S Huang, A Kaipainen, D Sanoudou, EJ Chen, GS Eichler, ...
Proceedings of the National Academy of Sciences 102 (52), 19097-19102, 2005
2312005
Perspectives on ENCODE
MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ...
Nature 583 (7818), 693-698, 2020
892020
Expression of terminal effector genes in mammalian neurons is maintained by a dynamic relay of transient enhancers
HS Rhee, M Closser, Y Guo, EV Bashkirova, GC Tan, DK Gifford, ...
Neuron 92 (6), 1252-1265, 2016
782016
Towards a holistic, yet gene-centered analysis of gene expression profiles: a case study of human lung cancers
Y Guo, GS Eichler, Y Feng, DE Ingber, S Huang
BioMed Research International 2006, 2006
722006
Discovering homotypic binding events at high spatial resolution
Y Guo, G Papachristoudis, RC Altshuler, GK Gerber, TS Jaakkola, ...
Bioinformatics 26 (24), 3028, 2010
602010
Predicting gene expression in massively parallel reporter assays: A comparative study
A Kreimer, H Zeng, MD Edwards, Y Guo, K Tian, S Shin, R Welch, ...
Human mutation 38 (9), 1240-1250, 2017
502017
A novel k-mer set memory (KSM) motif representation improves regulatory variant prediction
Y Guo, K Tian, H Zeng, X Guo, DK Gifford
Genome research 28 (6), 891-900, 2018
482018
Modular combinatorial binding among human trans-acting factors reveals direct and indirect factor binding
Y Guo, DK Gifford
BMC genomics 18, 1-16, 2017
352017
Identification of new branch points and unconventional introns in Saccharomyces cerevisiae
GM Gould, JM Paggi, Y Guo, DV Phizicky, B Zinshteyn, ET Wang, ...
RNA 22 (10), 1522-1534, 2016
352016
Medusa structure of the gene regulatory network: dominance of transcription factors in cancer subtype classification
Y Guo, Y Feng, NS Trivedi, S Huang
Experimental biology and medicine 236 (5), 628-636, 2011
282011
An expansion of the non-coding genome and its regulatory potential underlies vertebrate neuronal diversity
M Closser, Y Guo, P Wang, T Patel, S Jang, J Hammelman, JC De Nooij, ...
Neuron 110 (1), 70-85. e6, 2022
242022
Accurate eQTL prioritization with an ensemble‐based framework
H Zeng, MD Edwards, Y Guo, DK Gifford
Human mutation 38 (9), 1259-1265, 2017
162017
IDR2D identifies reproducible genomic interactions
K Krismer, Y Guo, DK Gifford
Nucleic acids research 48 (6), e31-e31, 2020
102020
High resolution discovery of chromatin interactions
Y Guo, K Krismer, M Closser, H Wichterle, DK Gifford
Nucleic acids research 47 (6), e35-e35, 2019
102019
Influence of texture on Hertzian indentation behavior of alumina
Y Guo, HM Chan
Journal of materials science letters 19 (4), 327-330, 2000
12000
K-mer Set Memory (KSM) Motif Representation Enables Accurate Prediction of the Impact of Regulatory Variants
Y Guo, K Tian, H Zeng, D Gifford
Research in Computational Molecular Biology, 372, 2017
2017
Simultaneous computational discovery of DNA regulatory motifs and transcription factor binding constraints at high spatial resolution
Y Guo
Massachusetts Institute of Technology, 2012
2012
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Articles 1–20