Alistair Forrest

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Citations	29258	13963
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Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Hideya KawajiTokyo Metropolitan Institute of Medical ScienceVerified email at igakuken.or.jp
Timo LassmannTelethon Kids InstituteVerified email at telethonkids.org.au
Carsten O. DaubAssociate Professor, Karolinska InstitutetVerified email at ki.se
Prof. Sean M. GrimmondThe University of Melbourne Centre for Cancer ResearchVerified email at unimelb.edu.au
harukazu suzukiGroup Director, RIKEN CLSTVerified email at gsc.riken.jp
David HumeMater Research Institute-University of QueenslandVerified email at uq.edu.au
Erik ArnerGSKVerified email at gsk.com
Geoffrey FaulknerQueensland Brain Institute @ Mater Research Institute - University of QueenslandVerified email at mater.uq.edu.au
Jessica SeverinRIKENVerified email at gsc.riken.jp
Albin SandelinThe Bioinformatics Centre, Department of Biology & BRIC, Copenhagen UniversityVerified email at binf.ku.dk
Robin AnderssonUniversity of CopenhagenVerified email at binf.ku.dk
Stefano GustincichDeputy Director Life Tech Istituto Italiano di TecnologiaVerified email at iit.it
Takeya KasukawaLaboratory for Large-Scale Biomedical Data Technology, RIKEN Center for Integrative Medical SciencesVerified email at riken.jp
Nicolas BertinGenome Institute of SingaporeVerified email at gis.a-star.edu.sg
Brian GabrielliMater Research Institute - The University of QueenslandVerified email at uq.edu.au
Elena DenisenkoResearch Associate, Systems Biology and Genomics, Harry Perkins Institute of Medical ResearchVerified email at perkins.uwa.edu.au
Professor Kate SchroderClarivate Highly Cited Researcher; Lab Head, Institute for Molecular Bioscience, University of QLDVerified email at imb.uq.edu.au
Jay W ShinGroup Leader at Genomic Institute of Singapore, A*STARVerified email at gis.a-star.edu.sg
Rui HouHarry Perkins Institute of Medical Research, UWAVerified email at uwa.edu.au

Alistair Forrest

Head of Systems Biology and Genomics, Harry Perkins Institute of Medical Research

Verified email at perkins.uwa.edu.au - Homepage

Systems Biology CAGE transcriptomics Single Cell scRNAseq


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The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... Science 309 (5740), 1559-1563, 2005	3885	2005
An atlas of active enhancers across human cell types and tissues R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ... Nature 507 (7493), 455-461, 2014	2404	2014
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, ... Nature 420 (6915), 563-573, 2002	2007	2002
A promoter level mammalian expression atlas ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL de Hoon, V Haberle, ... Nature 507 (7493), 462-470, 2014	1571*	2014
Genome-wide analysis of mammalian promoter architecture and evolution P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ... Nature genetics 38 (6), 626-635, 2006	1543	2006
Stem cell transcriptome profiling via massive-scale mRNA sequencing N Cloonan, ARR Forrest, G Kolle, BBA Gardiner, GJ Faulkner, MK Brown, ... Nature methods 5 (7), 613-619, 2008	1330	2008
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat C Carrieri, L Cimatti, M Biagioli, A Beugnet, S Zucchelli, S Fedele, ... Nature 491 (7424), 454-457, 2012	983	2012
An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199-204, 2017	893	2017
The regulated retrotransposon transcriptome of mammalian cells GJ Faulkner, Y Kimura, CO Daub, S Wani, C Plessy, KM Irvine, ... Nature genetics 41 (5), 563-571, 2009	842	2009
An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci Cell 140 (5), 744-752, 2010	772	2010
Gateways to the FANTOM5 promoter level mammalian expression atlas M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ... Genome biology 16 (1), 1-14, 2015	742	2015
A draft network of ligand-receptor-mediated multicellular signalling in human JA Ramilowski, T Goldberg, J Harshbarger, E Kloppman, M Lizio, ... Nature communications 6, 2015	630	2015
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ... Science 347 (6225), 1010-1014, 2015	552	2015
Stromal cell diversity associated with immune evasion in human triple‐negative breast cancer SZ Wu, DL Roden, C Wang, H Holliday, K Harvey, AS Cazet, KJ Murphy, ... The EMBO Journal 39 (19), e104063, 2020	526*	2020
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line H Suzuki, ARR Forrest, E van Nimwegen, CO Daub, PJ Balwierz, ... Nature genetics 41 (5), 553-562, 2009	471	2009
An integrated expression atlas of miRNAs and their promoters in human and mouse D de Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ... Nature Biotechnology 35 (9), 872-878, 2017	467	2017
Tiny RNAs associated with transcription start sites in animals RJ Taft, EA Glazov, N Cloonan, C Simons, S Stephen, GJ Faulkner, ... Nature genetics 41 (5), 572-578, 2009	421	2009
The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition N Cloonan, MK Brown, AL Steptoe, S Wani, WL Chan, ARR Forrest, ... Genome biology 9 (8), R127, 2008	338	2008
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation J Fraser, C Ferrai, AM Chiariello, M Schueler, T Rito, G Laudanno, ... Molecular Systems Biology 11 (12), 852, 2015	336	2015
Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance A Fort, K Hashimoto, D Yamada, M Salimullah, CA Keya, A Saxena, ... Nature genetics 46 (6), 558-566, 2014	284	2014

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