Alistair Forrest

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Citations	32426	14942
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Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Hideya KawajiTokyo Metropolitan Institute of Medical ScienceVerified email at igakuken.or.jp
Timo LassmannTelethon Kids InstituteVerified email at telethonkids.org.au
Prof. Sean M. GrimmondThe University of Melbourne Centre for Cancer ResearchVerified email at unimelb.edu.au
David HumeMater Research Institute-University of QueenslandVerified email at uq.edu.au
Geoffrey FaulknerQueensland Brain Institute @ Mater Research Institute - University of QueenslandVerified email at mater.uq.edu.au
Albin SandelinThe Bioinformatics Centre, Department of Biology & BRIC, Copenhagen University, DenmarkVerified email at binf.ku.dk
Rui HouHarry Perkins Institute of Medical Research, UWAVerified email at uwa.edu.au
Stefano GustincichDeputy Director Life Tech Istituto Italiano di TecnologiaVerified email at iit.it
Brian GabrielliMater Research Institute - The University of QueenslandVerified email at uq.edu.au
Jordan A. RamilowskiAdvanced Medical Research Center, Yokohama City University (JP), ProfessorVerified email at yokohama-cu.ac.jp
Anna NowakUniversity of Western AustraliaVerified email at uwa.edu.au
Ryan ListerUniversity of Western Australia; Harry Perkins Institute of Medical ResearchVerified email at uwa.edu.au
Anthony MathelierAssociate Director and Group Leader, Centre for Molecular Medicine Norway (NCMM)Verified email at ncmm.uio.no
Belinda GuoUniversity of Western AustraliaVerified email at uwa.edu.au
Vanessa Fear (nee Cull)University of Western AustraliaVerified email at telethonkids.org.au
Christine Wells OR Christine A. WellsUniversity of MelbourneVerified email at unimelb.edu.au
Rebecca K SimmonsUniversity of Western AustraliaVerified email at research.uwa.edu.au
W. Joost LesterhuisTelethon Kids Institute, University of Western AustraliaVerified email at uwa.edu.au
Rachael M ZemekTelethon Kids InstituteVerified email at telethonkids.org.au

Alistair Forrest

Systems Biology and Genomics Lab, Harry Perkins Institute of Medical Research, UWA

Verified email at perkins.uwa.edu.au - Homepage

Systems Biology transcriptomics Single Cell Cell communication spatial transcriptomics


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The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... Science 309 (5740), 1559-1563, 2005	4108	2005
An atlas of active enhancers across human cell types and tissues R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ... Nature 507 (7493), 455-461, 2014	2719	2014
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, ... Nature 420 (6915), 563-573, 2002	2096	2002
A promoter level mammalian expression atlas ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL de Hoon, V Haberle, ... Nature 507 (7493), 462-470, 2014	1761*	2014
Genome-wide analysis of mammalian promoter architecture and evolution P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ... Nature genetics 38 (6), 626-635, 2006	1640	2006
Stem cell transcriptome profiling via massive-scale mRNA sequencing N Cloonan, ARR Forrest, G Kolle, BBA Gardiner, GJ Faulkner, MK Brown, ... Nature methods 5 (7), 613-619, 2008	1388	2008
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat C Carrieri, L Cimatti, M Biagioli, A Beugnet, S Zucchelli, S Fedele, ... Nature 491 (7424), 454-457, 2012	1101	2012
An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199-204, 2017	1041	2017
The regulated retrotransposon transcriptome of mammalian cells GJ Faulkner, Y Kimura, CO Daub, S Wani, C Plessy, KM Irvine, ... Nature genetics 41 (5), 563-571, 2009	905	2009
Gateways to the FANTOM5 promoter level mammalian expression atlas M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ... Genome biology 16 (1), 1-14, 2015	877	2015
An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci Cell 140 (5), 744-752, 2010	850	2010
A draft network of ligand-receptor-mediated multicellular signalling in human JA Ramilowski, T Goldberg, J Harshbarger, E Kloppman, M Lizio, ... Nature communications 6, 2015	785	2015
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ... Science 347 (6225), 1010-1014, 2015	623	2015
An integrated expression atlas of miRNAs and their promoters in human and mouse D de Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ... Nature Biotechnology 35 (9), 872-878, 2017	588	2017
Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows E Denisenko, BB Guo, M Jones, R Hou, L de Kock, T Lassmann, D Poppe, ... Genome Biology 21 (1), 1-25, 2020	464	2020
Tiny RNAs associated with transcription start sites in animals RJ Taft, EA Glazov, N Cloonan, C Simons, S Stephen, GJ Faulkner, ... Nature genetics 41 (5), 572-578, 2009	438	2009
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line H Suzuki, ARR Forrest, E van Nimwegen, CO Daub, PJ Balwierz, ... Nature genetics 41 (5), 553-562, 2009	414	2009
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation J Fraser, C Ferrai, AM Chiariello, M Schueler, T Rito, G Laudanno, ... Molecular Systems Biology 11 (12), 852, 2015	386	2015
The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition N Cloonan, MK Brown, AL Steptoe, S Wani, WL Chan, ARR Forrest, ... Genome biology 9 (8), R127, 2008	365	2008
Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance A Fort, K Hashimoto, D Yamada, M Salimullah, CA Keya, A Saxena, ... Nature genetics 46 (6), 558-566, 2014	315	2014

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