| Recovering Gene Interactions from Single-Cell Data Using Data Diffusion D Van Dijk, R Sharma, J Nainys, K Yim, P Kathail, A Carr, C Burdziak, ... Cell 174 (3), 716-729.e27, 2018 | 1223 | 2018 |
| Neuroinvasion of SARS-CoV-2 in human and mouse brain E Song, C Zhang, B Israelow, A Lu-Culligan, AV Prado, S Skriabine, P Lu, ... Journal of Experimental Medicine 218 (3), e20202135, 2021 | 862 | 2021 |
| Visualizing structure and transitions in high-dimensional biological data KR Moon, D van Dijk, Z Wang, S Gigante, DB Burkhardt, WS Chen, K Yim, ... Nature biotechnology 37 (12), 1482-1492, 2019 | 634 | 2019 |
| Genome-wide CRISPR screens reveal host factors critical for SARS-CoV-2 infection J Wei, MM Alfajaro, PC DeWeirdt, RE Hanna, WJ Lu-Culligan, WL Cai, ... Cell 184 (1), 76-91. e13, 2021 | 401 | 2021 |
| A neutrophil activation signature predicts critical illness and mortality in COVID-19 ML Meizlish, AB Pine, JD Bishai, G Goshua, ER Nadelmann, M Simonov, ... Blood advances 5 (5), 1164-1177, 2021 | 256 | 2021 |
| Development and validation of the quick COVID-19 severity index: a prognostic tool for early clinical decompensation AD Haimovich, NG Ravindra, S Stoytchev, HP Young, FP Wilson, ... Annals of emergency medicine 76 (4), 442-453, 2020 | 251 | 2020 |
| Exploring single-cell data with deep multitasking neural networks M Amodio, D Van Dijk, K Srinivasan, WS Chen, H Mohsen, KR Moon, ... Nature methods 16 (11), 1139-1145, 2019 | 239 | 2019 |
| Publication metrics and success on the academic job market D Van Dijk, O Manor, LB Carey Current Biology 24 (11), R516-R517, 2014 | 225 | 2014 |
| PD-1 marks dysfunctional regulatory T cells in malignant gliomas DE Lowther, BA Goods, LE Lucca, BA Lerner, K Raddassi, D van Dijk, ... JCI insight 1 (5), 2016 | 213 | 2016 |
| Immune dysregulation and autoreactivity correlate with disease severity in SARS-CoV-2-associated multisystem inflammatory syndrome in children A Ramaswamy, NN Brodsky, TS Sumida, M Comi, H Asashima, ... Immunity 54 (5), 1083-1095. e7, 2021 | 177 | 2021 |
| Promoter sequence determines the relationship between expression level and noise LB Carey, D van Dijk, PMA Sloot, JA Kaandorp, E Segal PLoS biology 11 (4), e1001528, 2013 | 168 | 2013 |
| Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes NG Ravindra, MM Alfajaro, V Gasque, NC Huston, H Wan, K Szigeti-Buck, ... PLoS biology 19 (3), e3001143, 2021 | 163 | 2021 |
| MAGIC: A diffusion-based imputation method reveals gene-gene interactions in single-cell RNA-sequencing data D Dijk, J Nainys, R Sharma, P Kaithail, AJ Carr, KR Moon, L Mazutis, ... BioRxiv, 111591, 2017 | 161 | 2017 |
| Distinguishing features of Long COVID identified through immune profiling J Klein, J Wood, J Jaycox, RM Dhodapkar, P Lu, JR Gehlhausen, ... Nature, 1-3, 2023 | 139 | 2023 |
| Manifold learning-based methods for analyzing single-cell RNA-sequencing data KR Moon, JS Stanley III, D Burkhardt, D van Dijk, G Wolf, S Krishnaswamy Current Opinion in Systems Biology 7, 36-46, 2018 | 134 | 2018 |
| Probing the effect of promoters on noise in gene expression using thousands of designed sequences E Sharon, D van Dijk, Y Kalma, L Keren, O Manor, Z Yakhini, E Segal Genome research 24 (10), 1698-1706, 2014 | 126 | 2014 |
| Circulating markers of angiogenesis and endotheliopathy in COVID-19 AB Pine, ML Meizlish, G Goshua, CH Chang, H Zhang, J Bishai, P Bahel, ... Pulmonary circulation 10 (4), 2045894020966547, 2020 | 105 | 2020 |
| Quantifying the effect of experimental perturbations at single-cell resolution DB Burkhardt, JS Stanley III, A Tong, AL Perdigoto, SA Gigante, ... Nature biotechnology 39 (5), 619-629, 2021 | 102 | 2021 |
| Trajectorynet: A dynamic optimal transport network for modeling cellular dynamics A Tong, J Huang, G Wolf, D Van Dijk, S Krishnaswamy International conference on machine learning, 9526-9536, 2020 | 99 | 2020 |
| Noise in gene expression is coupled to growth rate L Keren, D Van Dijk, S Weingarten-Gabbay, D Davidi, G Jona, ... Genome Research 25 (12), 1893-1902, 2015 | 87 | 2015 |
Lucas CareyGinkgo BioworksVerified email at pku.edu.cn
