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Bertil Schmidt
Bertil Schmidt
Professor of Computer Science, University of Mainz
Verified email at uni-mainz.de - Homepage
Title
Cited by
Cited by
Year
CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units
Y Liu, DL Maskell, B Schmidt
BMC research notes 2, 1-10, 2009
3542009
Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data
Y Liu, J Schröder, B Schmidt
Bioinformatics 29 (3), 308-315, 2013
3012013
MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities
Y Liu, B Schmidt, DL Maskell
Bioinformatics 26 (16), 1958-1964, 2010
2672010
CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions
Y Liu, A Wirawan, B Schmidt
BMC bioinformatics 14, 1-10, 2013
2662013
CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions
Y Liu, B Schmidt, DL Maskell
BMC research notes 3 (1), 1-12, 2010
2572010
Streaming algorithms for biological sequence alignment on GPUs
W Liu, B Schmidt, G Voss, W Muller-Wittig
IEEE transactions on parallel and distributed systems 18 (9), 1270-1281, 2007
2292007
SHREC: a short-read error correction method
J Schröder, H Schröder, SJ Puglisi, R Sinha, B Schmidt
Bioinformatics 25 (17), 2157-2163, 2009
2092009
CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform
Y Liu, B Schmidt, DL Maskell
Bioinformatics 28 (14), 1830-1837, 2012
2062012
Accelerating molecular dynamics simulations using Graphics Processing Units with CUDA
W Liu, B Schmidt, G Voss, W Müller-Wittig
Computer physics communications 179 (9), 634-641, 2008
1952008
Bio-sequence database scanning on a GPU
W Liu, B Schmidt, G Voss, A Schroder, W Muller-Wittig
Proceedings 20th IEEE International Parallel & Distributed Processing …, 2006
1602006
Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW
T Oliver, B Schmidt, D Nathan, R Clemens, D Maskell
Bioinformatics 21 (16), 3431-3432, 2005
1432005
Long read alignment based on maximal exact match seeds
Y Liu, B Schmidt
Bioinformatics 28 (18), i318-i324, 2012
1292012
Hyper customized processors for bio-sequence database scanning on FPGAs
T Oliver, B Schmidt, D Maskell
Proceedings of the 2005 ACM/SIGDA 13th international symposium on Field …, 2005
1222005
Next-generation sequencing: big data meets high performance computing
B Schmidt, A Hildebrandt
Drug discovery today 22 (4), 712-717, 2017
1192017
MSA-CUDA: multiple sequence alignment on graphics processing units with CUDA
Y Liu, B Schmidt, DL Maskell
2009 20th IEEE International Conference on Application-specific Systems …, 2009
1182009
CUDA-BLASTP: accelerating BLASTP on CUDA-enabled graphics hardware
W Liu, B Schmidt, W Muller-Wittig
IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (6 …, 2011
1102011
Reconfigurable architectures for bio-sequence database scanning on FPGAs
TF Oliver, B Schmidt, DL Maskell
IEEE Transactions on Circuits and Systems II: Express Briefs 52 (12), 851-855, 2005
1102005
CUDA–MEME: accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units
Y Liu, B Schmidt, W Liu, DL Maskell
Pattern Recognition Letters 31 (14), 2170-2177, 2010
1022010
Parallelized short read assembly of large genomes using de Bruijn graphs
Y Liu, B Schmidt, DL Maskell
BMC bioinformatics 12, 1-10, 2011
1012011
Molecular dynamics simulations on commodity GPUs with CUDA
W Liu, B Schmidt, G Voss, W Müller-Wittig
High Performance Computing–HiPC 2007: 14th International Conference, Goa …, 2007
922007
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