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The human colon cancer methylome shows similar hypo-and hypermethylation at conserved tissue-specific CpG island shores
RA Irizarry, C Ladd-Acosta, B Wen, Z Wu, C Montano, P Onyango, H Cui, ...
Nature genetics 41 (2), 178-186, 2009
22812009
A model-based background adjustment for oligonucleotide expression arrays
Z Wu, RA Irizarry, R Gentleman, F Martinez-Murillo, F Spencer
Journal of the American statistical Association 99 (468), 909-917, 2004
20522004
Removing technical variability in RNA-seq data using conditional quantile normalization
KD Hansen, RA Irizarry, Z Wu
Biostatistics 13 (2), 204-216, 2012
5972012
Preprocessing of oligonucleotide array data
Z Wu, RA Irizarry
Nature biotechnology 22 (6), 656-658, 2004
4832004
A benchmark for Affymetrix GeneChip expression measures
LM Cope, RA Irizarry, HA Jaffee, Z Wu, TP Speed
Bioinformatics 20 (3), 323-331, 2004
4182004
Comparison of Affymetrix GeneChip expression measures
RA Irizarry, Z Wu, HA Jaffee
Bioinformatics 22 (7), 789-794, 2006
4032006
Stochastic models inspired by hybridization theory for short oligonucleotide arrays
Z Wu, RA Irizarry
Proceedings of the eighth annual international conference on Resaerch in …, 2004
3752004
The transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response
ST Dyhrman, BD Jenkins, TA Rynearson, MA Saito, ML Mercier, ...
PloS one 7 (3), e33768, 2012
2992012
DNA hypomethylation arises later in prostate cancer progression than CpG island hypermethylation and contributes to metastatic tumor heterogeneity
S Yegnasubramanian, MC Haffner, Y Zhang, B Gurel, TC Cornish, Z Wu, ...
Cancer research 68 (21), 8954-8967, 2008
2972008
A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data
H Wu, C Wang, Z Wu
Biostatistics 14 (2), 232-243, 2013
2412013
Sequencing technology does not eliminate biological variability
KD Hansen, Z Wu, RA Irizarry, JT Leek
Nature biotechnology 29 (7), 572-573, 2011
2162011
Alternative statistical parameter for high-throughput screening assay quality assessment
Y Sui, Z Wu
Journal of biomolecular screening 12 (2), 229-234, 2007
1402007
Gold nanocage-photosensitizer conjugates for dual-modal image-guided enhanced photodynamic therapy.
A Srivatsan, SV Jenkins, M Jeon, Z Wu, C Kim, J Chen, RK Pandey
Theranostics 4 (2), 163-174, 2014
1312014
Targeting tumor-associated macrophages in an orthotopic murine model of diffuse malignant mesothelioma
NR Miselis, ZJ Wu, N Van Rooijen, AB Kane
Molecular cancer therapeutics 7 (4), 788-799, 2008
1272008
Anti-HIV activity in cervical-vaginal secretions from HIV-positive and-negative women correlate with innate antimicrobial levels and IgG antibodies
M Ghosh, JV Fahey, Z Shen, T Lahey, S Cu-Uvin, Z Wu, K Mayer, ...
PloS one 5 (6), e11366, 2010
1262010
Adipose tissue palmitoleic acid and obesity in humans: does it behave as a lipokine?
J Gong, H Campos, S McGarvey, Z Wu, R Goldberg, A Baylin
The American journal of clinical nutrition 93 (1), 186-191, 2011
1022011
Use of mixture models in a microarray-based screening procedure for detecting differentially represented yeast mutants
RA Irizarry, SL Ooi, Z Wu, JD Boeke
Statistical applications in genetics and molecular biology 2 (1), 2003
942003
Gcrma: background adjustment using sequence information
J Wu, R Irizarry, J MacDonald, J Gentry
R package version 2200, 3-10, 2012
872012
Drug and cell type-specific regulation of genes with different classes of estrogen receptor β-selective agonists
S Paruthiyil, A Cvoro, X Zhao, Z Wu, Y Sui, RE Staub, S Baggett, ...
PloS one 4 (7), e6271, 2009
792009
Accurate genome-scale percentage DNA methylation estimates from microarray data
MJ Aryee, Z Wu, C Ladd-Acosta, B Herb, AP Feinberg, ...
Biostatistics 12 (2), 197-210, 2011
772011
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