Niles A. Pierce

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Harry M. T. ChoiCEO, Molecular Instruments, Inc.Verified email at molecularinstruments.com
Michael B. GilesProfessor of Scientific Computing, University of OxfordVerified email at maths.ox.ac.uk
Erik WinfreeCalifornia Institute of TechnologyVerified email at caltech.edu
Mark FornacePostdoctoral scholar, California Institute of TechnologyVerified email at caltech.edu
Scott E FraserUniversity of Southern CaliforniaVerified email at provost.usc.edu
Antony JamesonProfessor of Aerospace Engineering, Texas A&M UniversityVerified email at tamu.edu
Luigi MartinelliPrinceton UniversityVerified email at princeton.edu
Nicholas James PorubskyPhD, CaltechVerified email at caltech.edu
Victor A BeckLawrence Livermore National LaboratoryVerified email at llnl.gov
Jining HuangVerified email at jining.ca
Jens-Dominik MuellerReader, School of Engineering and Materials Science, Queen Mary University of LondonVerified email at qmul.ac.uk
Paul W.K. RothemundCalifornia Institute of TechnologyVerified email at dna.caltech.edu
Viviana GradinaruProfessor of Neuroscience and Biological Engineering at CaltechVerified email at caltech.edu
Chang Ho SohnAssistant Professor at KAIST (Korea Advanced Institute of Science and Technology), KoreaVerified email at kaist.ac.kr
Ben GordonMIT, Broad Institute of MIT and HarvardVerified email at mit.edu
Andrew SpakowitzStanford UniversityVerified email at stanford.edu
Zhen-Gang WangCalifornia Institute of TechnologyVerified email at caltech.edu
Zhewei ChenCaltechVerified email at caltech.edu
Endre SuliProfessor of Numerical Analysis, University of OxfordVerified email at maths.ox.ac.uk
Mike C LiuMolecular Instruments, Inc.Verified email at molecularinstruments.com

Niles A. Pierce

MacArthur Professor, California Institute of Technology

Verified email at caltech.edu - Homepage

molecular programming small conditional RNAs analysis and design algorithms quantitative


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Triggered amplification by hybridization chain reaction RM Dirks, NA Pierce Proceedings of the National Academy of Sciences of the United States of …, 2004	1936	2004
NUPACK: analysis and design of nucleic acid systems JN Zadeh, CD Steenberg, JS Bois, BR Wolfe, MB Pierce, AR Khan, ... Journal of computational chemistry 32 (1), 170-173, 2011	1786	2011
Programming biomolecular self-assembly pathways P Yin, HMT Choi, CR Calvert, NA Pierce Nature 451 (7176), 318-322, 2008	1598	2008
An introduction to the adjoint approach to design MB Giles, NA Pierce Flow, turbulence and combustion 65 (3-4), 393-415, 2000	1335	2000
Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust HMT Choi, M Schwarzkopf, ME Fornace, A Acharya, G Artavanis, ... Development 145, doi:10.1242/dev.165753, 2018	953	2018
Optimum aerodynamic design using the Navier–Stokes equations A Jameson, L Martinelli, NA Pierce Theoretical and computational fluid dynamics 10 (1-4), 213-237, 1998	944	1998
A synthetic DNA walker for molecular transport JS Shin, NA Pierce Journal of the American Chemical Society 126 (35), 10834-10835, 2004	898	2004
Programmable in situ amplification for multiplexed imaging of mRNA expression HMT Choi, JY Chang, LA Trinh, JE Padilla, SE Fraser, NA Pierce Nature biotechnology 28 (11), 1208-1212, 2010	664	2010
Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability HMT Choi, VA Beck, NA Pierce ACS Nano 8 (5), 4284-4294, 2014	600	2014
A partition function algorithm for nucleic acid secondary structure including pseudoknots RM Dirks, NA Pierce Journal of computational chemistry 24 (13), 1664-1677, 2003	467	2003
Thermodynamic analysis of interacting nucleic acid strands RM Dirks, JS Bois, JM Schaeffer, E Winfree, NA Pierce SIAM review 49 (1), 65-88, 2007	428	2007
Algorithm developments for discrete adjoint methods M Giles, MC Duta, JD Müller, NA Pierce AIAA Journal 41 (2), 198-205, 2003	399	2003
Adjoint equations in CFD: Duality, boundary conditions and solution behaviour MB Giles, NA Pierce 13th Computational Fluid Dynamics Conference, 1997	374	1997
Adjoint recovery of superconvergent functionals from PDE approximations NA Pierce, MB Giles SIAM Review 42 (2), 247-264, 2000	367	2000
An autonomous polymerization motor powered by DNA hybridization S Venkataraman, RM Dirks, PWK Rothemund, E Winfree, NA Pierce Nature nanotechnology 2 (8), 490-494, 2007	357	2007
Protein design is NP-hard NA Pierce, E Winfree Protein Engineering 15 (10), 779-782, 2002	324	2002
Paradigms for computational nucleic acid design RM Dirks, M Lin, E Winfree, NA Pierce Nucleic Acids Research 32 (4), 1392-1403, 2004	280	2004
Nucleic acid sequence design via efficient ensemble defect optimization JN Zadeh, BR Wolfe, NA Pierce Journal of computational chemistry 32 (3), 439-452, 2011	252	2011
An algorithm for computing nucleic acid base‐pairing probabilities including pseudoknots RM Dirks, NA Pierce Journal of computational chemistry 25 (10), 1295-1304, 2004	238	2004
Single-molecule RNA detection at depth via hybridization chain reaction and tissue hydrogel embedding and clearing S Shah, E Lubeck, M Schwarzkopf, TF He, A Greenbaum, C Ho Sohn, ... Development 143, 2862-2867, 2016	228	2016

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