Niles A. Pierce

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Harry M. T. ChoiCEO, Molecular Instruments, Inc.Verified email at molecularinstruments.com
Michael B. GilesProfessor of Scientific Computing, University of OxfordVerified email at maths.ox.ac.uk
Erik WinfreeCalifornia Institute of TechnologyVerified email at caltech.edu
Mark FornacePostdoctoral scholar, California Institute of TechnologyVerified email at caltech.edu
Scott E FraserUniversity of Southern CaliforniaVerified email at provost.usc.edu
Antony JamesonProfessor of Aerospace Engineering, Texas A&M UniversityVerified email at tamu.edu
Luigi MartinelliPrinceton UniversityVerified email at princeton.edu
Nicholas James PorubskyPhD, CaltechVerified email at caltech.edu
Jining HuangVerified email at jining.ca
Victor A BeckLawrence Livermore National LaboratoryVerified email at llnl.gov
Jens-Dominik MuellerReader, School of Engineering and Materials Science, Queen Mary University of LondonVerified email at qmul.ac.uk
Paul W.K. RothemundCalifornia Institute of TechnologyVerified email at dna.caltech.edu
Viviana GradinaruProfessor of Neuroscience and Biological Engineering at CaltechVerified email at caltech.edu
Chang Ho SohnAssistant Professor at KAIST (Korea Advanced Institute of Science and Technology), KoreaVerified email at kaist.ac.kr
Ben GordonMIT, Broad Institute of MIT and HarvardVerified email at mit.edu
Zhewei ChenCaltechVerified email at caltech.edu
Andrew SpakowitzStanford UniversityVerified email at stanford.edu
Zhen-Gang WangCalifornia Institute of TechnologyVerified email at caltech.edu
Mike C LiuMolecular Instruments, Inc.Verified email at molecularinstruments.com
Endre SuliProfessor of Numerical Analysis, University of OxfordVerified email at maths.ox.ac.uk

Niles A. Pierce

MacArthur Professor, California Institute of Technology

Verified email at caltech.edu - Homepage

molecular programming small conditional RNAs analysis and design algorithms quantitative


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Triggered amplification by hybridization chain reaction RM Dirks, NA Pierce Proceedings of the National Academy of Sciences of the United States of …, 2004	2012	2004
NUPACK: analysis and design of nucleic acid systems JN Zadeh, CD Steenberg, JS Bois, BR Wolfe, MB Pierce, AR Khan, ... Journal of computational chemistry 32 (1), 170-173, 2011	1870	2011
Programming biomolecular self-assembly pathways P Yin, HMT Choi, CR Calvert, NA Pierce Nature 451 (7176), 318-322, 2008	1648	2008
An introduction to the adjoint approach to design MB Giles, NA Pierce Flow, turbulence and combustion 65 (3-4), 393-415, 2000	1368	2000
Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust HMT Choi, M Schwarzkopf, ME Fornace, A Acharya, G Artavanis, ... Development 145, doi:10.1242/dev.165753, 2018	1090	2018
Optimum aerodynamic design using the Navier–Stokes equations A Jameson, L Martinelli, NA Pierce Theoretical and computational fluid dynamics 10 (1-4), 213-237, 1998	965	1998
A synthetic DNA walker for molecular transport JS Shin, NA Pierce Journal of the American Chemical Society 126 (35), 10834-10835, 2004	906	2004
Programmable in situ amplification for multiplexed imaging of mRNA expression HMT Choi, JY Chang, LA Trinh, JE Padilla, SE Fraser, NA Pierce Nature biotechnology 28 (11), 1208-1212, 2010	692	2010
Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability HMT Choi, VA Beck, NA Pierce ACS Nano 8 (5), 4284-4294, 2014	633	2014
A partition function algorithm for nucleic acid secondary structure including pseudoknots RM Dirks, NA Pierce Journal of computational chemistry 24 (13), 1664-1677, 2003	477	2003
Thermodynamic analysis of interacting nucleic acid strands RM Dirks, JS Bois, JM Schaeffer, E Winfree, NA Pierce SIAM review 49 (1), 65-88, 2007	439	2007
Algorithm developments for discrete adjoint methods M Giles, MC Duta, JD Müller, NA Pierce AIAA Journal 41 (2), 198-205, 2003	404	2003
Adjoint equations in CFD: Duality, boundary conditions and solution behaviour MB Giles, NA Pierce 13th Computational Fluid Dynamics Conference, 1997	382	1997
Adjoint recovery of superconvergent functionals from PDE approximations NA Pierce, MB Giles SIAM Review 42 (2), 247-264, 2000	378	2000
An autonomous polymerization motor powered by DNA hybridization S Venkataraman, RM Dirks, PWK Rothemund, E Winfree, NA Pierce Nature nanotechnology 2 (8), 490-494, 2007	363	2007
Protein design is NP-hard NA Pierce, E Winfree Protein Engineering 15 (10), 779-782, 2002	330	2002
Paradigms for computational nucleic acid design RM Dirks, M Lin, E Winfree, NA Pierce Nucleic Acids Research 32 (4), 1392-1403, 2004	288	2004
Nucleic acid sequence design via efficient ensemble defect optimization JN Zadeh, BR Wolfe, NA Pierce Journal of computational chemistry 32 (3), 439-452, 2011	260	2011
An algorithm for computing nucleic acid base‐pairing probabilities including pseudoknots RM Dirks, NA Pierce Journal of computational chemistry 25 (10), 1295-1304, 2004	245	2004
Single-molecule RNA detection at depth via hybridization chain reaction and tissue hydrogel embedding and clearing S Shah, E Lubeck, M Schwarzkopf, TF He, A Greenbaum, C Ho Sohn, ... Development 143, 2862-2867, 2016	237	2016

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