Niles A. Pierce
Niles A. Pierce
Professor of Applied & Computational Mathematics and Bioengineering, California Institute of
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Cited by
Cited by
Triggered amplification by hybridization chain reaction
RM Dirks, NA Pierce
Proceedings of the National Academy of Sciences of the United States of …, 2004
NUPACK: analysis and design of nucleic acid systems
JN Zadeh, CD Steenberg, JS Bois, BR Wolfe, MB Pierce, AR Khan, ...
Journal of computational chemistry 32 (1), 170-173, 2011
Programming biomolecular self-assembly pathways
P Yin, HMT Choi, CR Calvert, NA Pierce
Nature 451 (7176), 318-322, 2008
An introduction to the adjoint approach to design
MB Giles, NA Pierce
Flow, turbulence and combustion 65 (3-4), 393-415, 2000
Optimum aerodynamic design using the Navier–Stokes equations
A Jameson, L Martinelli, NA Pierce
Theoretical and computational fluid dynamics 10 (1-4), 213-237, 1998
A synthetic DNA walker for molecular transport
JS Shin, NA Pierce
Journal of the American Chemical Society 126 (35), 10834-10835, 2004
Programmable in situ amplification for multiplexed imaging of mRNA expression
HMT Choi, JY Chang, LA Trinh, JE Padilla, SE Fraser, NA Pierce
Nature biotechnology 28 (11), 1208-1212, 2010
Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust
HMT Choi, M Schwarzkopf, ME Fornace, A Acharya, G Artavanis, ...
Development 145, doi:10.1242/dev.165753, 2018
Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability
HMT Choi, VA Beck, NA Pierce
ACS Nano 8 (5), 4284-4294, 2014
A partition function algorithm for nucleic acid secondary structure including pseudoknots
RM Dirks, NA Pierce
Journal of computational chemistry 24 (13), 1664-1677, 2003
Thermodynamic analysis of interacting nucleic acid strands
RM Dirks, JS Bois, JM Schaeffer, E Winfree, NA Pierce
SIAM review 49 (1), 65-88, 2007
Algorithm developments for discrete adjoint methods
M Giles, MC Duta, JD Müller, NA Pierce
AIAA Journal 41 (2), 198-205, 2003
Adjoint recovery of superconvergent functionals from PDE approximations
NA Pierce, MB Giles
SIAM Review 42 (2), 247-264, 2000
Adjoint equations in CFD: Duality, boundary conditions and solution behaviour
MB Giles, NA Pierce
13th Computational Fluid Dynamics Conference, 1997
An autonomous polymerization motor powered by DNA hybridization
S Venkataraman, RM Dirks, PWK Rothemund, E Winfree, NA Pierce
Nature nanotechnology 2 (8), 490-494, 2007
Protein design is NP-hard
NA Pierce, E Winfree
Protein Engineering 15 (10), 779-782, 2002
Paradigms for computational nucleic acid design
RM Dirks, M Lin, E Winfree, NA Pierce
Nucleic Acids Research 32 (4), 1392-1403, 2004
An algorithm for computing nucleic acid base‐pairing probabilities including pseudoknots
RM Dirks, NA Pierce
Journal of computational chemistry 25 (10), 1295-1304, 2004
Nucleic acid sequence design via efficient ensemble defect optimization
JN Zadeh, BR Wolfe, NA Pierce
Journal of computational chemistry 32 (3), 439-452, 2011
Conformational splitting: A more powerful criterion for dead‐end elimination
NA Pierce, JA Spriet, J Desmet, SL Mayo
Journal of computational chemistry 21 (11), 999-1009, 2000
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