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Zekun Yin (殷泽坤)
Zekun Yin (殷泽坤)
School of Software, Shandong University
Verified email at mail.sdu.edu.cn
Title
Cited by
Cited by
Year
18.9-Pflops nonlinear earthquake simulation on Sunway TaihuLight: enabling depiction of 18-Hz and 8-meter scenarios
H Fu, C He, B Chen, Z Yin, Z Zhang, W Zhang, T Zhang, W Xue, W Liu, ...
Proceedings of the International Conference for High Performance Computing …, 2017
1412017
Computing platforms for big biological data analytics: perspectives and challenges
Z Yin, H Lan, G Tan, M Lu, AV Vasilakos, W Liu
Computational and structural biotechnology journal 15, 403-411, 2017
782017
RabbitQC: high-speed scalable quality control for sequencing data
Z Yin, H Zhang, M Liu, W Zhang, H Song, H Lan, Y Wei, B Niu, B Schmidt, ...
Bioinformatics 37 (4), 573-574, 2021
122021
Efficient parallel sort on avx-512-based multi-core and many-core architectures
Z Yin, T Zhang, A Müller, H Liu, Y Wei, B Schmidt, W Liu
2019 IEEE 21st international conference on high performance computing and …, 2019
122019
SLPal: Accelerating long sequence alignment on many-core and multi-core architectures
X Xu, Y Chan, K Xu, J Zhang, X Wang, Z Yin, W Liu
2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2020
82020
RabbitMash: accelerating hash-based genome analysis on modern multi-core architectures
Z Yin, X Xu, J Zhang, Y Wei, B Schmidt, W Liu
Bioinformatics 37 (6), 873-875, 2021
62021
Rabbittclust: enabling fast clustering analysis of millions of bacteria genomes with minhash sketches
X Xu, Z Yin, L Yan, H Zhang, B Xu, Y Wei, B Niu, B Schmidt, W Liu
Genome Biology 24 (1), 121, 2023
32023
Rabbitfx: efficient framework for fasta/q file parsing on modern multi-core platforms
H Zhang, H Song, X Xu, Q Chang, M Wang, Y Wei, Z Yin, B Schmidt, ...
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2022
32022
69.7-PFlops Extreme Scale Earthquake Simulation with Crossing Multi-faults and Topography on Sunway
W Wan, L Gan, W Wang, Z Yin, H Tian, Z Zhang, Y Wang, M Hua, X Liu, ...
Proceedings of the International Conference for High Performance Computing …, 2023
22023
DGCF: A Distributed Greedy Clustering Framework for Large-scale Genomic Sequences
Z Yin, X Xu, K Fan, R Li, W Li, W Liu, B Niu
2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2019
22019
O2ath: An OpenMP offloading toolkit for the sunway heterogeneous manycore platform
H Lin, L Yan, Q Chang, H Lu, C Li, Q He, Z Song, X Duan, Z Yin, Y Li, ...
CCF Transactions on High Performance Computing, 1-13, 2024
12024
RabbitQCPlus 2.0: More efficient and versatile quality control for sequencing data
L Yan, Z Yin, H Zhang, Z Zhao, M Wang, A Müller, F Kallenborn, ...
Methods 216, 39-50, 2023
12023
RabbitQCPlus: More Efficient Quality Control for Sequencing Data
L Yan, Z Yin, H Zhang, Z Zhao, M Wang, A Müller, R Kobus, Y Wei, B Niu, ...
2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022
12022
RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures
H Zhang, Q Chang, Z Yin, X Xu, Y Wei, B Schmidt, W Liu
Bioinformatics 38 (10), 2932-2933, 2022
12022
Leveraging Data Density and Sparsity for Efficient SVM Training on GPUs
B Xu, Z Wen, L Yan, Z Zhao, Z Yin, W Liu, B He
2023 IEEE International Conference on Data Mining (ICDM), 698-707, 2023
2023
RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures
X Xu, Z Yin, L Yan, H Yi, H Wang, B Schmidt, W Liu
Bioinformatics 39 (11), btad695, 2023
2023
Ray-based Elastic Distributed Data Parallel Framework with Distributed Data Cache
H Lin, X Qin, S Qiu, Y Sun, Z Yin, W Liu
2023 IEEE International Parallel and Distributed Processing Symposium …, 2023
2023
DeepFilter: A Deep Learning Based Variant Filter for VarDict
H Zhang, Z Yin, Y Wei, B Schmidt, W Liu
Tsinghua Science and Technology 28 (4), 665-672, 2023
2023
RabbitVar: ultra-fast and accurate somatic small-variant calling on multi-core architectures
H Zhang, H Song, Z Yin, Q Chang, Y Wei, B Niu, B Schmidt, W Liu
bioRxiv, 2023.01. 06.522980, 2023
2023
Redesigning elastic full‐waveform inversion on the new Sunway architecture
M Hua, W Wan, Z Sun, Z Yin, P Xiong, X Liu, H Tian, P Gao, W Liu, ...
Engineering Reports, e12819, 2023
2023
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