Sarah Djebali

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Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Dmitri PervouchineSkolkovo Institute for Science and TechnologyVerified email at skoltech.ru
Thomas GingerasProfessor of Functional Genomics, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Michael SammethInstitute of Biophysics Carlos Chagas Filho (IBCCF), Federal University of Rio de Janeiro (UFRJ)Verified email at sammeth.net
Rory JohnsonUniversity College DublinVerified email at ucd.ie
Marta MeléGroup Leader at Barcelona Supercomputing CenterVerified email at bsc.es
Mark GersteinProfessor of Biomedical Informatics, Yale UniversityVerified email at yale.edu
Pedro G. FerreiraDepartment of Computer Science, Faculty of Sciences University of Porto; INESC-TECVerified email at fc.up.pt
Taylor Young, MD, MAUniversity of Massachusetts Medical SchoolVerified email at umassmemorial.org
Tuuli LappalainenSciLifeLab, KTH Royal Institute of Technology & New York Genome CenterVerified email at nygenome.org
Fred A WrightNorth Carolina State UniversityVerified email at ncsu.edu
Emmanouil Dermitzakis, Manolis Der...VP Computational Biology, GSKVerified email at gsk.com
Gad GetzMassachusetts General Hospital and Broad Institute of Harvard and MITVerified email at broadinstitute.org
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Zhiping WengProf & Director, Program in Bioinformatics and Integrative Biology, UMASS Medical SchoolVerified email at umassmed.edu
Chao ChengBaylor College of MedicineVerified email at bcm.edu
Xianjun Dong, PhDAssistant Professor, Harvard Medical School; Director of Genomics and Bioinformatics Hub, BWHVerified email at rics.bwh.harvard.edu
Joao CuradoFlomics Biotech, Barcelona, SpainVerified email at flomics.com
Hagen TilgnerAssistant professor of neurogeneticsVerified email at med.cornell.edu
Anshul KundajeAssociate Professor, Dept. of Genetics, Dept. of Computer Science, Stanford UniversityVerified email at stanford.edu

Sarah Djebali

IRSD, INSERM U1220, Toulouse

Verified email at inserm.fr - Homepage

Gene expression regulation enhancers Transcriptome Chimeras comparative genomics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
An integrated encyclopedia of DNA elements in the human genome TE consortium Nature 489, 57-74, 2012	13180	2012
Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012	5232	2012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ... Genome research 22 (9), 1775-1789, 2012	5047	2012
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Overall coordination (data analysis coordination ... Nature 489 (7414), 57-74, 2012	2893	2012
A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014	1793	2014
The human transcriptome across tissues and individuals M Melé, PG Ferreira, F Reverter, DS DeLuca, J Monlong, M Sammeth, ... Science 348 (6235), 660-665, 2015	1244	2015
An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199-204, 2017	938	2017
Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013	732	2013
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs H Tilgner, DG Knowles, R Johnson, CA Davis, S Chakrabortty, S Djebali, ... Genome research 22 (9), 1616-1625, 2012	496	2012
Genome-Wide Association Study in Asian Populations Identifies Variants in ETS1 and WDFY4 Associated with Systemic Lupus Erythematosus W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ... PLoS genetics 6 (2), e1000841, 2010	446	2010
An encyclopedia of mouse DNA elements (Mouse ENCODE) JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ... Genome biology 13 (8), 1-5, 2012	355	2012
Comparative analysis of the transcriptome across distant species MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ... Nature 512 (7515), 445-448, 2014	313	2014
Modeling gene expression using chromatin features in various cellular contexts X Dong, MC Greven, A Kundaje, S Djebali, JB Brown, C Cheng, ... Genome biology 13 (9), 1-17, 2012	312	2012
Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia PG Ferreira, P Jares, D Rico, G Gómez-López, A Martínez-Trillos, ... Genome research 24 (2), 212-226, 2014	238	2014
A benchmark for RNA-seq quantification pipelines M Teng, MI Love, CA Davis, S Djebali, A Dobin, BR Graveley, S Li, ... Genome biology 17 (1), 1-12, 2016	202	2016
Understanding transcriptional regulation by integrative analysis of transcription factor binding data C Cheng, R Alexander, R Min, J Leng, KY Yip, J Rozowsky, KK Yan, ... Genome research 22 (9), 1658-1667, 2012	190	2012
An encyclopedia of mouse DNA elements (Mouse ENCODE) EC Mouse, JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, ... Genome Biol 13 (8), 418, 2012	142	2012
Multi-species annotation of transcriptome and chromatin structure in domesticated animals S Foissac, S Djebali, K Munyard, N Vialaneix, A Rau, K Muret, D Esquerré, ... BMC biology 17, 1-25, 2019	91	2019
Gene-specific patterns of expression variation across organs and species A Breschi, S Djebali, J Gillis, DD Pervouchine, A Dobin, CA Davis, ... Genome biology 17, 1-13, 2016	90	2016
Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression DD Pervouchine, S Djebali, A Breschi, CA Davis, PP Barja, A Dobin, ... Nature communications 6 (1), 5903, 2015	85	2015

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