Aakash Basu
Aakash Basu
Assistant Professor, Durham University
Verified email at - Homepage
Cited by
Cited by
Dynamics of chromatin decondensation reveals the structural integrity of a mechanically prestressed nucleus
A Mazumder, T Roopa, A Basu, L Mahadevan, GV Shivashankar
Biophysical journal 95 (6), 3028-3035, 2008
Gold rotor bead tracking for high-speed measurements of DNA twist, torque and extension
P Lebel, A Basu, FC Oberstrass, EM Tretter, Z Bryant
Nature methods 11 (4), 456-462, 2014
Measuring DNA mechanics on the genome scale
A Basu, DG Bobrovnikov, Z Qureshi, T Kayikcioglu, TTM Ngo, A Ranjan, ...
Nature 589, 462 - 467, 2020
Recent developments in single-molecule DNA mechanics
Z Bryant, FC Oberstrass, A Basu
Current opinion in structural biology 22 (3), 304-312, 2012
Traffic of interacting ribosomes: effects of single-machine mechanochemistry on protein synthesis
A Basu, D Chowdhury
Physical Review E 75 (2), 021902, 2007
ATP binding controls distinct structural transitions of Escherichia coli DNA gyrase in complex with DNA
A Basu, AJ Schoeffler, JM Berger, Z Bryant
Nature structural & molecular biology 19 (5), 538-546, 2012
Single-molecule analysis and engineering of DNA motors
S Mohapatra, CT Lin, XA Feng, A Basu, T Ha
Chemical Reviews 120 (1), 36-78, 2019
DNA mechanics and its biological impact
A Basu, DG Bobrovnikov, T Ha
Journal of molecular biology 433 (6), 166861, 2021
Direct mechanical stimulation of tip links in hair cells through DNA tethers
A Basu, S Lagier, M Vologodskaia, BA Fabella, AJ Hudspeth
eLife 5, e16041, 2016
Structural Dynamics and Mechanochemical Coupling in DNA Gyrase
A Basu, AC Parente, Z Bryant
Journal of molecular biology 428 (9), 1833-1845, 2016
Deciphering the mechanical code of the genome and epigenome
A Basu, DG Bobrovnikov, B Cieza, JP Arcon, Z Qureshi, M Orozco, T Ha
Nature Structural & Molecular Biology, 1-10, 2022
Dynamic coupling between conformations and nucleotide states in DNA gyrase
A Basu, M Hobson, P Lebel, LE Fernandes, EM Tretter, JM Berger, ...
Nature chemical biology 14 (6), 565-574, 2018
Modeling protein synthesis from a physicist’s perspective: A toy model
A Basu, D Chowdhury
American Journal of Physics 75, 931, 2007
Delay times and detector times for optical pulses traversing plasmas and negative refractive media
L Nanda, A Basu, SA Ramakrishna
Physical Review E 74 (3), 036601, 2006
Intra-cellular traffic: bio-molecular motors on filamentary tracks
D Chowdhury, A Basu, A Garai, P Greulich, K Nishinari, ...
The European Physical Journal B 64 (3-4), 593-600, 2008
Searching for sequence features that control DNA flexibility
Y Zhang, A Basu, T Ha, W Bialek
Biophysical Journal 121 (3), 446a, 2022
Loop-seq: A high-throughput technique to measure the mesoscale mechanical properties of DNA.
A Basu
Methods in Enzymology 661, 305-326, 2021
A method for assaying DNA flexibility
E Cirakli, A Basu
Methods, 2023
The impact of the sequence-dependent physical properties of DNA on chromatin dynamics
A Biswas, A Basu
Current Opinion in Structural Biology, 102698, 2023
Single-molecule biophysics: The light side of the force
A Basu, T Ha
Elife 5, e14274, 2016
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