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Yuchen Zhang
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A comprehensive survey on computational methods of non-coding RNA and disease association prediction
X Lei, TB Mudiyanselage, Y Zhang, C Bian, W Lan, N Yu, Y Pan
Briefings in Bioinformatics 22 (4), bbaa350, 2021
432021
Association predictions of genomics, proteinomics, transcriptomics, microbiome, metabolomics, pathomics, radiomics, drug, symptoms, environment factor, and disease networks: A …
Y Pan, X Lei, Y Zhang
Medicinal Research Reviews 42 (1), 441-461, 2022
412022
CircRNA-disease associations prediction based on metapath2vec++ and matrix factorization
Y Zhang, X Lei, Z Fang, Y Pan
Big Data Mining and Analytics 3 (4), 280-291, 2020
382020
CircR2Disease v2. 0: an updated web server for experimentally validated circRNA–disease associations and its application
C Fan, X Lei, J Tie, Y Zhang, FX Wu, Y Pan
Genomics, Proteomics and Bioinformatics 20 (3), 435-445, 2022
262022
Predicting disease-genes based on network information loss and protein complexes in heterogeneous network
X Lei, Y Zhang
Information Sciences 479, 386-400, 2019
232019
Topology potential based seed-growth method to identify protein complexes on dynamic PPI data
X Lei, Y Zhang, S Cheng, FX Wu, W Pedrycz
Information Sciences 425, 140-153, 2018
212018
Prediction of disease-associated circRNAs via circRNA–disease pair graph and weighted nuclear norm minimization
Y Zhang, X Lei, Y Pan, W Pedrycz
Knowledge-Based Systems 214, 106694, 2021
202021
Drug Repositioning with GraphSAGE and Clustering Constraints Based on Drug and Disease Networks
Y Zhang, X Lei, Y Pan, FX Wu
Frontiers in Pharmacology, 10.3389/fphar.2022.872785, 2022
132022
The prediction of molecular toxicity based on BiGRU and GraphSAGE
J Liu, X Lei, Y Zhang, Y Pan
Computers in Biology and Medicine 153, 106524, 2023
112023
Identification of pathway-specific protein domain by incorporating hyperparameter optimization based on 2D convolutional neural network
A Ghualm, X Lei, Y Zhang, S Cheng, M Guo
IEEE Access 8, 180140-180155, 2020
102020
Identify potential circRNA-disease associations through a multi-objective evolutionary algorithm
Y Zhang, X Lei, C Dai, Y Pan, FX Wu
Information Sciences 647, 119437, 2023
42023
Firefly clustering method for mining protein complexes
Y Zhang, X Lei, Y Tan
Advances in Swarm Intelligence: 8th International Conference, ICSI 2017 …, 2017
42017
Application of fireworks algorithm in bioinformatics
Y Zhang, X Lei, Y Tan
Handbook of Research on Fireworks Algorithms and Swarm Intelligence, 233-262, 2020
22020
Human drug-pathway association prediction based on network consistency projection
A Ghulam, X Lei, Y Zhang, Z Wu
Computational Biology and Chemistry 97, 107624, 2022
12022
Mining protein complexes based on topology potential from weighted dynamic PPI network
X Lei, Y Zhang, FX Wu, A Zhang
2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2016
12016
A Review of Drug-related Associations Prediction Based on Artificial Intelligence Methods
M Ma, X Lei, Y Zhang
Current Bioinformatics, 10.2174/1574893618666230707123817, 2023
2023
Negative Sample Selection for miRNA-Disease Association Prediction Models
Y Ding, F Wang, Y Zhang, FX Wu
Machine Learning Methods for Multi-Omics Data Integration, 75-90, 2023
2023
Pathway-Specific Protein Domains (PSPD) Discrimination by Using a Hybrid Feature Space Based on Deep Neural Network (DNN)
A Ghulam, XJ Lei, Y Zhang, Z Wu
2020
PDG-PIO: Predicting Disease-genes Based on Pigeon-inspired Optimization
Y Zhang, X Lei, S Cheng
2019 IEEE Congress on Evolutionary Computation (CEC), 3285-3291, 2019
2019
Firefly algorithm and its applications
X Lei, Y Zhang, J Zhao, S Cheng, Y Tan
Swarm Intelligence: Innovation, New Algorithms and Methods 119, 221, 2018
2018
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