Follow
Shivashankar Nagaraj
Title
Cited by
Cited by
Year
High-throughput functional annotation and data mining with the Blast2GO suite
S Götz, JM García-Gómez, J Terol, TD Williams, SH Nagaraj, MJ Nueda, ...
Nucleic acids research 36 (10), 3420-3435, 2008
41142008
Whole–genome characterization of chemoresistant ovarian cancer
AM Patch, EL Christie, D Etemadmoghadam, DW Garsed, J George, ...
Nature 521 (7553), 489-494, 2015
14672015
Development of human protein reference database as an initial platform for approaching systems biology in humans
S Peri, JD Navarro, R Amanchy, TZ Kristiansen, CK Jonnalagadda, ...
Genome research 13 (10), 2363-2371, 2003
13282003
Whole-genome landscape of pancreatic neuroendocrine tumours
A Scarpa, DK Chang, K Nones, V Corbo, AM Patch, P Bailey, RT Lawlor, ...
Nature 543 (7643), 65-71, 2017
8272017
Human protein reference database as a discovery resource for proteomics
S Peri, JD Navarro, TZ Kristiansen, R Amanchy, V Surendranath, ...
Nucleic acids research 32 (suppl_1), D497-D501, 2004
7012004
A hitchhiker's guide to expressed sequence tag (EST) analysis
SH Nagaraj, RB Gasser, S Ranganathan
Briefings in bioinformatics 8 (1), 6-21, 2007
3992007
Proteomics analysis of the excretory/secretory component of the blood-feeding stage of the hookworm, Ancylostoma caninum
J Mulvenna, B Hamilton, SH Nagaraj, D Smyth, A Loukas, JJ Gorman
Molecular & Cellular Proteomics 8 (1), 109-121, 2009
2092009
Association weight matrix for the genetic dissection of puberty in beef cattle
MRS Fortes, A Reverter, Y Zhang, E Collis, SH Nagaraj, NN Jonsson, ...
Proceedings of the National Academy of Sciences 107 (31), 13642-13647, 2010
1782010
Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data
A Reverter, NJ Hudson, SH Nagaraj, M Pérez-Enciso, BP Dalrymple
Bioinformatics 26 (7), 896-904, 2010
1742010
Plasma Proteome Database as a resource for proteomics research
B Muthusamy, G Hanumanthu, S Suresh, B Rekha, D Srinivas, L Karthick, ...
Proteomics 5 (13), 3531-3536, 2005
1712005
A single nucleotide polymorphism-derived regulatory gene network underlying puberty in 2 tropical breeds of beef cattle
MRS Fortes, A Reverter, SH Nagaraj, Y Zhang, NN Jonsson, W Barris, ...
Journal of Animal Science 89 (6), 1669-1683, 2011
1342011
The evolution of tropical adaptation: comparing taurine and zebu cattle
EKF Chan, SH Nagaraj, A Reverter
Animal Genetics 41 (5), 467-477, 2010
1052010
Targeting DNA damage response and replication stress in pancreatic cancer
SB Dreyer, R Upstill-Goddard, V Paulus-Hock, C Paris, EM Lampraki, ...
Gastroenterology 160 (1), 362-377. e13, 2021
992021
Transcriptional Changes in the Hookworm, Ancylostoma caninum, during the Transition from a Free-Living to a Parasitic Larva
BJD Datu, RB Gasser, SH Nagaraj, EK Ong, P O'Donoghue, R McInnes, ...
PLoS neglected tropical diseases 2 (1), e130, 2008
902008
HNF4A and GATA6 loss reveals therapeutically actionable subtypes in pancreatic cancer
H Brunton, G Caligiuri, R Cunningham, R Upstill-Goddard, UM Bailey, ...
Cell reports 31 (6), 2020
872020
ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform
SH Nagaraj, N Deshpande, RB Gasser, S Ranganathan
Nucleic Acids Research 35 (suppl_2), W143-W147, 2007
842007
Gene network analyses of first service conception in Brangus heifers: use of genome and trait associations, hypothalamic-transcriptome information, and transcription factors
MRS Fortes, WM Snelling, A Reverter, SH Nagaraj, SA Lehnert, ...
Journal of Animal Science 90 (9), 2894-2906, 2012
782012
A Boolean-based systems biology approach to predict novel genes associated with cancer: Application to colorectal cancer
SH Nagaraj, A Reverter
BMC systems biology 5, 1-15, 2011
702011
PGTools: a software suite for proteogenomic data analysis and visualization
SH Nagaraj, N Waddell, AK Madugundu, S Wood, A Jones, RA Mandyam, ...
Journal of proteome research 14 (5), 2255-2266, 2015
672015
Targeting epithelial–mesenchymal plasticity in cancer: clinical and preclinical advances in therapy and monitoring
S Bhatia, J Monkman, AKL Toh, SH Nagaraj, EW Thompson
Biochemical Journal 474 (19), 3269-3306, 2017
652017
The system can't perform the operation now. Try again later.
Articles 1–20