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Yatish Turakhia
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Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic
Y Turakhia, B Thornlow, AS Hinrichs, N De Maio, L Gozashti, R Lanfear, ...
Nature Genetics 53 (6), 809-816, 2021
2682021
Domain-specific hardware accelerators
WJ Dally, Y Turakhia, S Han
Communications of the ACM 63 (7), 48-57, 2020
2272020
Darwin: A Genomics Co-processor Provides up to 15,000 X Acceleration on Long Read Assembly
Y Turakhia, G Bejerano, WJ Dally
Proceedings of the Twenty-Third International Conference on Architectural …, 2018
182*2018
Cherry-picking: Exploiting process variations in dark-silicon homogeneous chip multi-processors
B Raghunathan, Y Turakhia, S Garg, D Marculescu
2013 Design, Automation & Test in Europe Conference & Exhibition (DATE), 39-44, 2013
1382013
Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape
Y Turakhia, B Thornlow, A Hinrichs, J McBroome, N Ayala, C Ye, K Smith, ...
Nature 609 (7929), 994-997, 2022
107*2022
Mutation rates and selection on synonymous mutations in SARS-CoV-2
N De Maio, CR Walker, Y Turakhia, R Lanfear, R Corbett-Detig, ...
Genome Biology and Evolution 13 (5), evab087, 2021
992021
Stability of SARS-CoV-2 phylogenies
Y Turakhia, N De Maio, B Thornlow, L Gozashti, R Lanfear, CR Walker, ...
PLoS genetics 16 (11), e1009175, 2020
952020
HaDeS: architectural synthesis for heterogeneous dark silicon chip multi-processors
Y Turakhia, B Raghunathan, S Garg, D Marculescu
Proceedings of the 50th Annual Design Automation Conference, 1-7, 2013
752013
A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees
J McBroome, B Thornlow, AS Hinrichs, A Kramer, N De Maio, N Goldman, ...
Molecular biology and evolution 38 (12), 5819-5824, 2021
682021
A functional enrichment test for molecular convergent evolution finds a clear protein-coding signal in echolocating bats and whales
A Marcovitz, Y Turakhia, HI Chen, M Gloudemans, BA Braun, H Wang, ...
Proceedings of the National Academy of Sciences 116 (42), 21094-21103, 2019
49*2019
Low-power architecture for sparse neural network
YG Turakhia, J Jaffari, A Panda, K Chatha
US Patent App. 15/377,858, 2018
342018
Darwin-WGA: A co-processor provides increased sensitivity in whole genome alignments with high speedup
Y Turakhia, SD Goenka, G Bejerano, WIJ Dally
2019 IEEE International Symposium on High Performance Computer Architecture …, 2019
332019
Architecture for sparse neural network acceleration
YG Turakhia, J Jaffari, A Panda, K Chatha
US Patent 10,871,964, 2020
302020
Maximum likelihood pandemic-scale phylogenetics
N De Maio, P Kalaghatgi, Y Turakhia, R Corbett-Detig, BQ Minh, ...
Nature genetics 55 (5), 746-752, 2023
222023
The magazine archive includes every article published in Communications of the ACM for over the past 50 years.
G Lewandowski, DJ Bouvier, TY Chen, R McCartney, K Sanders, B Simon, ...
Communications of the ACM 53 (7), 60-70, 2010
17*2010
matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2
C Ye, B Thornlow, A Hinrichs, A Kramer, C Mirchandani, D Torvi, ...
Bioinformatics 38 (15), 3734-3740, 2022
162022
A phylogeny-based metric for estimating changes in transmissibility from recurrent mutations in SARS-CoV-2
D Richard, LP Shaw, R Lanfear, R Corbett-Detig, A Hinrichs, J McBroome, ...
BioRxiv, 2021.05. 06.442903, 2021
152021
SegAlign: A scalable GPU-based whole genome aligner
SD Goenka, Y Turakhia, B Paten, M Horowitz
SC20: International Conference for High Performance Computing, Networking …, 2020
152020
Thread progress equalization: Dynamically adaptive power-constrained performance optimization of multi-threaded applications
Y Turakhia, G Liu, S Garg, D Marculescu
IEEE Transactions on Computers 66 (4), 731-744, 2016
142016
Identifying SARS-CoV-2 regional introductions and transmission clusters in real time
J McBroome, J Martin, A de Bernardi Schneider, Y Turakhia, ...
Virus Evolution 8 (1), veac048, 2022
132022
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Articles 1–20