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Andrey Prjibelski
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
Journal of computational biology 19 (5), 455-477, 2012
162802012
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
9472013
Assembling genomes and mini-metagenomes from highly chimeric reads
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Annual International Conference on Research in Computational Molecular …, 2013
668*2013
Versatile genome assembly evaluation with QUAST-LG
A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich
Bioinformatics 34 (13), i142-i150, 2018
3742018
Using SPAdes de novo assembler
A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov
Current protocols in bioinformatics 70 (1), e102, 2020
2822020
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
E Bushmanova, D Antipov, A Lapidus, AD Prjibelski
GigaScience 8 (9), giz100, 2019
2642019
ExSPAnder: a universal repeat resolver for DNA fragment assembly
AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ...
Bioinformatics 30 (12), i293-i301, 2014
1012014
Versatile genome assembly evaluation with QUAST-LG. Bioinformatics 34: i142–i150
A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich
852018
rnaQUAST: a quality assessment tool for de novo transcriptome assemblies
E Bushmanova, D Antipov, A Lapidus, V Suvorov, AD Prjibelski
Bioinformatics 32 (14), 2210-2212, 2016
852016
Icarus: visualizer for de novo assembly evaluation
A Mikheenko, G Valin, A Prjibelski, V Saveliev, A Gurevich
Bioinformatics 32 (21), 3321-3323, 2016
772016
A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain
A Joglekar, A Prjibelski, A Mahfouz, P Collier, S Lin, AK Schlusche, ...
Nature Communications 12 (1), 1-16, 2021
50*2021
Assembling short reads from jumping libraries with large insert sizes
I Vasilinetc, AD Prjibelski, A Gurevich, A Korobeynikov, PA Pevzner
Bioinformatics 31 (20), 3262-3268, 2015
442015
De novo peptide sequencing reveals many cyclopeptides in the human gut and other environments
B Behsaz, H Mohimani, A Gurevich, A Prjibelski, M Fisher, F Vargas, ...
Cell Systems 10 (1), 99-108. e5, 2020
212020
Extending rnaSPAdes functionality for hybrid transcriptome assembly
AD Prjibelski, GD Puglia, D Antipov, E Bushmanova, D Giordano, ...
BMC Bioinformatics 21 (302), 2020
132020
Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.)
GD Puglia, AD Prjibelski, D Vitale, E Bushmanova, KJ Schmid, ...
BMC genomics 21 (1), 1-17, 2020
112020
Understanding complex dynamics of behavioral, neurochemical and transcriptomic changes induced by prolonged chronic unpredictable stress in zebrafish
KA Demin, AM Lakstygal, NA Krotova, A Masharsky, N Tagawa, ...
Scientific reports 10 (1), 1-20, 2020
92020
Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue
SA Hardwick, W Hu, A Joglekar, L Fan, PG Collier, C Foord, J Balacco, ...
Nature Biotechnology, 1-11, 2022
8*2022
Sequence analysis
AD Prjibelski, AI Korobeynikov, AL Lapidus
Encyclopedia of Bioinformatics and Computational Biology: ABC of …, 2018
82018
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
F Pardo-Palacios, F Reese, S Carbonell-Sala, M Diekhans, C Liang, ...
72021
Seed transcriptome annotation reveals enhanced expression of genes related to ROS homeostasis and ethylene metabolism at alternating temperatures in wild cardoon
HR Huarte, GD Puglia, AD Prjibelski, SA Raccuia
Plants 9 (9), 1225, 2020
72020
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Articles 1–20