The last common ancestor of most bilaterian animals possessed at least nine opsins MD Ramirez, AN Pairett, MS Pankey, JM Serb, DI Speiser, AJ Swafford, ... Genome biology and evolution 8 (12), 3640-3652, 2016 | 138 | 2016 |
Eye-independent, light-activated chromatophore expansion (LACE) and expression of phototransduction genes in the skin of Octopus bimaculoides MD Ramirez, TH Oakley Journal of Experimental Biology 218 (10), 1513-1520, 2015 | 135 | 2015 |
Understanding the dermal light sense in the context of integrative photoreceptor cell biology. MD Ramirez, DI Speiser, MS Pankey, TH Oakley Visual neuroscience, 1, 2011 | 75 | 2011 |
Prolific origination of eyes in Cnidaria with co-option of non-visual opsins N Picciani, JR Kerlin, N Sierra, AJM Swafford, MD Ramirez, NG Roberts, ... Current Biology 28 (15), 2413-2419. e4, 2018 | 53 | 2018 |
Accelerated clearing and molecular labeling of biological tissues using magnetohydrodynamic force J Dwyer, MD Ramirez, PS Katz, RO Karlstrom, J Bergan Scientific reports 11 (1), 16462, 2021 | 5 | 2021 |
The genome of the soybean gall midge (Resseliella maxima) G Melotto, MW Jones, K Bosley, N Flack, LE Frank, E Jacobson, EJ Kipp, ... G3: Genes, Genomes, Genetics 13 (4), jkad046, 2023 | 2 | 2023 |
A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes JA Goodheart, RA Rio, NF Taraporevala, RA Fiorenza, SR Barnes, ... bioRxiv, 2023 | 1 | 2023 |
Implementation of California COVIDNet–a multi-sector collaboration for statewide SARS-CoV-2 genomic surveillance DA Wadford, N Baumrind, EF Baylis, JM Bell, EL Bouchard, M Crumpler, ... Frontiers in Public Health 11, 1249614, 2023 | 1 | 2023 |
Mapping neuronal gene expression reveals aspects of ganglionic organization in a gastropod mollusc MD Ramirez, T Bui, PS Katz bioRxiv, 2023.06. 22.546160, 2023 | 1 | 2023 |
Opsins without eyes-precursors or derivatives? TH Oakley, MD Ramirez INTEGRATIVE AND COMPARATIVE BIOLOGY 56, E164-E164, 2016 | 1 | 2016 |
A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes JA Goodheart, RA Rio, NF Taraporevala, RA Fiorenza, SR Barnes, ... BMC biology 22 (1), 9, 2024 | | 2024 |
Single neuron transcriptomics and in-situ hybridization chain reaction reveal molecular fingerprints for neurons in the brain of the nudibranch Berghia stephanieae MD Ramirez, TN Bui, PS Katz INTEGRATIVE AND COMPARATIVE BIOLOGY 62, S257-S258, 2023 | | 2023 |
Egg-laying hormone expression in identified neurons across developmental stages and reproductive states of the nudibranch Berghia stephanieae CC Tait, MD Ramirez, PS Katz bioRxiv, 2023.12. 21.572887, 2023 | | 2023 |
Using hybridization chain reaction for reliable, large-scale mapping of neurons in the brain of the nudibranch, Berghia stephanieae MD Ramirez, C Tait, PS Katz INTEGRATIVE AND COMPARATIVE BIOLOGY 61, E1231-E1232, 2021 | | 2021 |
Nudibranch opsins: identification, localization and potential roles in extraocular photoreception and circadian rhythms JM Newcomb, MA Gingras, SN Nelson, CB McGhee, JH Easter, ... INTEGRATIVE AND COMPARATIVE BIOLOGY 60, E173-E173, 2020 | | 2020 |
Molecular and behavioral characterization of two reproductive hormones in the nudibranch Berghia stephanieae C Tait, MD Ramirez, M Olson, PS Katz INTEGRATIVE AND COMPARATIVE BIOLOGY 60, E425-E425, 2020 | | 2020 |
Accelerated clearing and molecular labeling of large tissue samples using magnetohydrodynamic force J Dwyer, MD Ramirez, PS Katz, RO Karlstrom, J Bergan bioRxiv, 819292, 2019 | | 2019 |
Phylogenetic position of Alternochelata lizardensis Kornicker, 1982 within Rutidermatidae (Ostracoda: Myodocopida), with an investigation into its green coloration JH Peniston, EA Ellis, CKC Churchill, MD Ramirez, TH Oakley The Journal of Crustacean Biology 39 (5), 559-566, 2019 | | 2019 |
Behavioral Characterization of Berghia stephanieae: A Novel Laboratory Species for Neuroethological Research PD Quinlan, MD Ramirez, B Drescher, PS Katz INTEGRATIVE AND COMPARATIVE BIOLOGY 59, E391-E391, 2019 | | 2019 |
Creation of a standardized reference brain atlas for the nudibranch, Berghia stephanieae MD Ramirez, J Dwyer, JF Bergan, PS Katz INTEGRATIVE AND COMPARATIVE BIOLOGY 59, E392-E392, 2019 | | 2019 |