| Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs CT Saunders, WSW Wong, S Swamy, J Becq, LJ Murray, RK Cheetham Bioinformatics 28 (14), 1811-1817, 2012 | 1693 | 2012 |
| Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications X Chen, O Schulz-Trieglaff, R Shaw, B Barnes, F Schlesinger, M Källberg, ... Bioinformatics 32 (8), 1220-1222, 2016 | 1550 | 2016 |
| Strelka2: fast and accurate calling of germline and somatic variants S Kim, K Scheffler, AL Halpern, MA Bekritsky, E Noh, M Källberg, X Chen, ... Nature methods 15 (8), 591-594, 2018 | 1044 | 2018 |
| Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms C Raczy, R Petrovski, CT Saunders, I Chorny, S Kruglyak, EH Margulies, ... Bioinformatics 29 (16), 2041-2043, 2013 | 353 | 2013 |
| Evaluation of structural and evolutionary contributions to deleterious mutation prediction CT Saunders, D Baker Journal of molecular biology 322 (4), 891-901, 2002 | 268 | 2002 |
| Compressing Genomic Sequence Fragments Using SlimGene C Kozanitis, C Saunders, S Kruglyak, V Bafna, G Varghese Journal of Computational Biology 18 (3), 401-413, 2011 | 115 | 2011 |
| Recapitulation of protein family divergence using flexible backbone protein design CT Saunders, D Baker Journal of molecular biology 346 (2), 631-644, 2005 | 78 | 2005 |
| Compressing Genomic Sequence Fragments Using SlimGene C Kozanitis, C Saunders, S Kruglyak, V Bafna, G Varghese Research in Computational Molecular Biology: 14th Annual International …, 2010 | 32 | 2010 |
| REViewer: haplotype-resolved visualization of read alignments in and around tandem repeats E Dolzhenko, B Weisburd, K Ibañez, IS Rajan-Babu, C Anyansi, ... Genome medicine 14 (1), 84, 2022 | 19 | 2022 |
| Direct haplotype-resolved 5-base HiFi sequencing for genome-wide profiling of hypermethylation outliers in a rare disease cohort WA Cheung, AF Johnson, WJ Rowell, E Farrow, R Hall, ASA Cohen, ... Nature communications 14 (1), 3090, 2023 | 11 | 2023 |
| Insights from modeling protein evolution with context-dependent mutation and asymmetric amino acid selection CT Saunders, P Green Molecular biology and evolution 24 (12), 2632-2647, 2007 | 6 | 2007 |
| Synchronized long-read genome, methylome, epigenome, and transcriptome for resolving a Mendelian condition MR Vollger, J Korlach, KC Eldred, E Swanson, JG Underwood, ... bioRxiv, 2023 | 1 | 2023 |
| HiPhase: Jointly phasing small and structural variants from HiFi sequencing JM Holt, CT Saunders, WJ Rowell, Z Kronenberg, AM Wenger, M Eberle bioRxiv, 2023.05. 03.539241, 2023 | 1 | 2023 |
| HiPhase: jointly phasing small, structural, and tandem repeat variants from HiFi sequencing JM Holt, CT Saunders, WJ Rowell, Z Kronenberg, AM Wenger, M Eberle Bioinformatics 40 (2), btae042, 2024 | | 2024 |
| RFC1 repeat expansion analysis from whole genome sequencing data simplifies screening and increases diagnostic rates R Sullivan, S Chen, CT Saunders, W Yan Yau, Y Yen Goh, E O'Connor, ... medRxiv, 2024.02. 28.24303510, 2024 | | 2024 |
| Modeling Protein Evolution: Phylogenetic Analysis with Context-dependent Mutation and Recapitulation of Family Divergence Via Flexible Backbone Design CT Saunders University of Washington, 2007 | | 2007 |
| Indel detection using guided reassembly of unaligned paired-end reads O Schulz-Trieglaff, BDBAJ Cox, RK Cheetham, RJ Grocock, LJ Murray, ... | | |
