| The RAST Server: rapid annotations using subsystems technology RK Aziz, D Bartels, AA Best, M DeJongh, T Disz, RA Edwards, K Formsma, ... BMC genomics 9, 1-15, 2008 | 12116 | 2008 |
| The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) R Overbeek, R Olson, GD Pusch, GJ Olsen, JJ Davis, T Disz, RA Edwards, ... Nucleic acids research 42 (D1), D206-D214, 2014 | 4582 | 2014 |
| The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes F Meyer, D Paarmann, M D'Souza, R Olson, EM Glass, M Kubal, ... BMC bioinformatics 9, 1-8, 2008 | 4059 | 2008 |
| RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ... Scientific reports 5 (1), 1-6, 2015 | 2523 | 2015 |
| The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ... Nucleic acids research 33 (17), 5691-5702, 2005 | 2321 | 2005 |
| Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ... Nucleic acids research 45 (D1), D535-D542, 2017 | 1572 | 2017 |
| PATRIC, the bacterial bioinformatics database and analysis resource AR Wattam, D Abraham, O Dalay, TL Disz, T Driscoll, JL Gabbard, ... Nucleic acids research 42 (D1), D581-D591, 2014 | 1377 | 2014 |
| KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018 | 1186 | 2018 |
| The marine viromes of four oceanic regions FE Angly, B Felts, M Breitbart, P Salamon, RA Edwards, C Carlson, ... PLoS biology 4 (11), e368, 2006 | 1140 | 2006 |
| Functional metagenomic profiling of nine biomes EA Dinsdale, RA Edwards, D Hall, F Angly, M Breitbart, JM Brulc, ... Nature 452 (7187), 629-632, 2008 | 1128 | 2008 |
| The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ... Nucleic acids research 48 (D1), D606-D612, 2020 | 906 | 2020 |
| Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR RD Olson, R Assaf, T Brettin, N Conrad, C Cucinell, JJ Davis, ... Nucleic acids research 51 (D1), D678-D689, 2023 | 449 | 2023 |
| The Aurora or-parallel Prolog system E Lusk, R Butler, T Disz, R Olson, R Overbeek, R Stevens, DHD Warren, ... New Generation Computing 7, 243-271, 1990 | 438 | 1990 |
| Access grid: Immersive group-to-group collaborative visualization L Childers, T Disz, R Olson, ME Papka, R Stevens, T Udeshi Argonne National Lab., IL (US), 2000 | 249 | 2000 |
| Using Machine Learning To Predict Antimicrobial MICs and Associated Genomic Features for Nontyphoidal Salmonella M Nguyen, SW Long, PF McDermott, RJ Olsen, R Olson, RL Stevens, ... Journal of clinical microbiology 57 (2), 10.1128/jcm. 01260-18, 2019 | 240 | 2019 |
| Signals of significantly increased vaccine breakthrough, decreased hospitalization rates, and less severe disease in patients with coronavirus disease 2019 caused by the … PA Christensen, RJ Olsen, SW Long, R Snehal, JJ Davis, MO Saavedra, ... The American journal of pathology 192 (4), 642-652, 2022 | 234 | 2022 |
| Antimicrobial resistance prediction in PATRIC and RAST JJ Davis, S Boisvert, T Brettin, RW Kenyon, C Mao, R Olson, R Overbeek, ... Scientific reports 6 (1), 27930, 2016 | 227 | 2016 |
| SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models RK Aziz, S Devoid, T Disz, RA Edwards, CS Henry, GJ Olsen, R Olson, ... PloS one 7 (10), e48053, 2012 | 225 | 2012 |
| PATtyFams: protein families for the microbial genomes in the PATRIC database JJ Davis, S Gerdes, GJ Olsen, R Olson, GD Pusch, M Shukla, V Vonstein, ... Frontiers in microbiology 7, 118, 2016 | 196 | 2016 |
| Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae M Nguyen, T Brettin, SW Long, JM Musser, RJ Olsen, R Olson, M Shukla, ... Scientific reports 8 (1), 421, 2018 | 178 | 2018 |
Rick StevensProfessor of Computer Science, University of ChicagoVerified email at ci.uchicago.edu
