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Shaon Chakrabarti
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Year
Pharmacokinetics and drug-interactions determine optimum combination strategies in computational models of cancer evolution
S Chakrabarti, F Michor
Cancer Research, 2017
672017
Replicational dilution of H3K27me3 in mammalian cells and the role of poised promoters
U Jadhav, E Manieri, K Nalapareddy, S Madha, S Chakrabarti, ...
Molecular cell 78 (1), 141-151. e5, 2020
612020
Force-dependent switch in protein unfolding pathways and transition-state movements
PI Zhuravlev, M Hinczewski, S Chakrabarti, S Marqusee, D Thirumalai
Proceedings of the National Academy of Sciences of the United States of …, 2016
582016
Plasticity of hydrogen bond networks regulates mechanochemistry of cell adhesion complexes
S Chakrabarti, M Hinczewski, D Thirumalai
Proceedings of the National Academy of Sciences 111 (25), 9048-9053, 2014
572014
Phenomenological and microscopic theories for catch bonds
S Chakrabarti, M Hinczewski, D Thirumalai
Journal of structural biology 197 (1), 50-56, 2017
532017
Currently available bulk sequencing data do not necessarily support a model of neutral tumor evolution
TO McDonald, S Chakrabarti, F Michor
Nature genetics 50 (12), 1620-1623, 2018
412018
Hidden heterogeneity and circadian-controlled cell fate inferred from single cell lineages
S Chakrabarti, AL Paek, J Reyes, KA Lasick, G Lahav, F Michor
Nature Communications 9 (1), 5372, 2018
392018
Molecular chaperones maximize the native state yield on biological times by driving substrates out of equilibrium
S Chakrabarti, C Hyeon, X Ye, GH Lorimer, D Thirumalai
Proceedings of the National Academy of Sciences 114 (51), E10919-E10927, 2017
372017
Protein Collapse is Encoded in the Folded State Architecture
HS Samanta, P Zhuravlev, M Hinczewski, N Hori, S Chakrabarti, ...
Soft Matter 13 (19), 3622-3638, 2017
272017
Discrete Step Sizes of Molecular Motors Lead to Bimodal Non-Gaussian Velocity Distributions under Force
H Vu, S Chakrabarti, M Hinczewski, D Thirumalai
Physical Review Letters 117 (7), 078101, 2016
272016
Circadian clock effects on cellular proliferation: Insights from theory and experiments
S Chakrabarti, F Michor
Current Opinion in Cell Biology 67, 17-26, 2020
232020
Helicase Processivity and Not the Unwinding Velocity Exhibits Universal Increase with Force
D Pincus, S Chakrabarti, D Thirumalai
Biophysical Joural 109 (2), 220-230, 2015
192015
Identification of optimal dosing schedules of dacomitinib and osimertinib for a phase I/II trial in advanced EGFR-mutant non-small cell lung cancer
KE Poels, AJ Schoenfeld, A Makhnin, Y Tobi, Y Wang, H Frisco-Cabanos, ...
Nature Communications 12 (1), 3697, 2021
162021
Processivity, Velocity, and Universal Characteristics of Nucleic Acid Unwinding by Helicases
S Chakrabarti, C Jarzynski, D Thirumalai
Biophysical journal 117 (5), 867-879, 2019
102019
Diffusion controls local versus dispersed inheritance of histones during replication and shapes epigenomic architecture
A Singh, S Chakrabarti
PLOS Computational Biology 19 (12), 2023
22023
Timely questions emerging in Chronobiology: the Circadian Clock keeps on ticking
S Chawla, J O’Neill, MI Knight, Y He, L Wang, E Maronde, SG Rodríguez, ...
Ubiquity Press 22 (1), 2024
2024
Reflections on Several Landmark Advances in Circadian Biology
S Chawla, H Oster, GE Duffield, E Maronde, ME Guido, C Chabot, ...
Journal of circadian rhythms, 2024
2024
Combining lineage correlations and a small molecule inhibitor to detect circadian control of the cell cycle.
A Nikhat, S Chakrabarti
bioRxiv, 2024.03. 29.587345, 2024
2024
An improved rhythmicity analysis method using Gaussian Processes detects cell-density dependent circadian oscillations in stem cells
S Sahay, S Adhikari, S Hormoz, S Chakrabarti
Bioinformatics 39 (10), 2023
2023
Reply to Alberti: Are in vitro folding experiments relevant in vivo?
PI Zhuravlev, M Hinczewski, S Chakrabarti, S Marqusee, D Thirumalai
Proceedings of the National Academy of Sciences 113 (23), E3192-E3192, 2016
2016
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