Ruiqing Zheng
Ruiqing Zheng
School of Computer Science and Engineering, Central South University
Verified email at
Cited by
Cited by
Complex brain network analysis and its applications to brain disorders: a survey
J Liu, M Li, Y Pan, W Lan, R Zheng, FX Wu, J Wang
Complexity 2017, 2017
SinNLRR: a robust subspace clustering method for cell type detection by non-negative and low-rank representation
R Zheng, M Li, Z Liang, FX Wu, Y Pan, J Wang
Bioinformatics 35 (19), 3642-3650, 2019
Effective identification of essential proteins based on priori knowledge, network topology and gene expressions
M Li, R Zheng, H Zhang, J Wang, Y Pan
Methods 67 (3), 325-333, 2014
Network-based methods for predicting essential genes or proteins: a survey
X Li, W Li, M Zeng, R Zheng, M Li
Briefings in bioinformatics 21 (2), 566-583, 2020
DeepDSC: a deep learning method to predict drug sensitivity of cancer cell lines
M Li, Y Wang, R Zheng, X Shi, Y Li, FX Wu, J Wang
IEEE/ACM transactions on computational biology and bioinformatics 18 (2 …, 2019
BiXGBoost: a scalable, flexible boosting-based method for reconstructing gene regulatory networks
R Zheng, M Li, X Chen, FX Wu, Y Pan, J Wang
Bioinformatics 35 (11), 1893-1900, 2019
Association of germline variants in natural killer cells with tumor immune microenvironment subtypes, tumor-infiltrating lymphocytes, immunotherapy response, clinical outcomes …
X Xu, J Li, J Zou, X Feng, C Zhang, R Zheng, W Duanmu, A Saha-Mandal, ...
JAMA network open 2 (9), e199292-e199292, 2019
Identification of protein complexes by using a spatial and temporal active protein interaction network
M Li, X Meng, R Zheng, FX Wu, Y Li, Y Pan, J Wang
IEEE/ACM transactions on computational biology and bioinformatics 17 (3 …, 2017
A data-driven clustering recommendation method for single-cell RNA-sequencing data
Y Tian, R Zheng, Z Liang, S Li, FX Wu, M Li
Tsinghua Science and Technology 26 (5), 772-789, 2021
DPCMNE: detecting protein complexes from protein-protein interaction networks via multi-level network embedding
X Meng, J Xiang, R Zheng, FX Wu, M Li
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (3 …, 2021
KGANCDA: predicting circRNA-disease associations based on knowledge graph attention network
W Lan, Y Dong, Q Chen, R Zheng, J Liu, Y Pan, YPP Chen
Briefings in Bioinformatics 23 (1), bbab494, 2022
scGMAI: a Gaussian mixture model for clustering single-cell RNA-Seq data based on deep autoencoder
B Yu, C Chen, R Qi, R Zheng, PJ Skillman-Lawrence, X Wang, A Ma, ...
Briefings in Bioinformatics 22 (4), bbaa316, 2021
Prioritizing disease genes by using search engine algorithm
M Li, R Zheng, Q Li, J Wang, FX Wu, Z Zhang
Current Bioinformatics 11 (2), 195-202, 2016
A novel method of gene regulatory network structure inference from gene knock-out expression data
X Chen, M Li, R Zheng, S Zhao, FX Wu, Y Li, J Wang
Tsinghua Science and Technology 24 (4), 446-455, 2019
MGT-SM: a method for constructing cellular signal transduction networks
M Li, R Zheng, Y Li, FX Wu, J Wang
IEEE/ACM transactions on computational biology and bioinformatics 16 (2 …, 2017
An adaptive sparse subspace clustering for cell type identification
R Zheng, Z Liang, X Chen, Y Tian, C Cao, M Li
Frontiers in genetics 11, 407, 2020
NIDM: network impulsive dynamics on multiplex biological network for disease-gene prediction
J Xiang, J Zhang, R Zheng, X Li, M Li
Briefings in Bioinformatics 22 (5), bbab080, 2021
SSRE: cell type detection based on sparse subspace representation and similarity enhancement
Z Liang, M Li, R Zheng, Y Tian, X Yan, J Chen, FX Wu, J Wang
Genomics, proteomics & bioinformatics 19 (2), 282-291, 2021
An ensemble method to reconstruct gene regulatory networks based on multivariate adaptive regression splines
R Zheng, M Li, X Chen, S Zhao, FX Wu, Y Pan, J Wang
IEEE/ACM transactions on computational biology and bioinformatics 18 (1 …, 2019
Key residues influencing binding affinities of 2019-nCoV with ACE2 in different species
S Fang, R Zheng, C Lei, J Wang, R Zheng, M Li
Briefings in bioinformatics 22 (2), 963-975, 2021
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