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Ruiqing Zheng
Ruiqing Zheng
School of Computer Science and Engineering, Central South University
Verified email at csu.edu.cn
Title
Cited by
Cited by
Year
Complex brain network analysis and its applications to brain disorders: a survey
J Liu, M Li, Y Pan, W Lan, R Zheng, FX Wu, J Wang
Complexity 2017, 2017
1002017
Effective identification of essential proteins based on priori knowledge, network topology and gene expressions
M Li, R Zheng, H Zhang, J Wang, Y Pan
Methods 67 (3), 325-333, 2014
1002014
Network-based methods for predicting essential genes or proteins: a survey
X Li, W Li, M Zeng, R Zheng, M Li
Briefings in bioinformatics 21 (2), 566-583, 2020
702020
SinNLRR: a robust subspace clustering method for cell type detection by non-negative and low-rank representation
R Zheng, M Li, Z Liang, FX Wu, Y Pan, J Wang
Bioinformatics 35 (19), 3642-3650, 2019
682019
DeepDSC: a deep learning method to predict drug sensitivity of cancer cell lines
M Li, Y Wang, R Zheng, X Shi, Y Li, FX Wu, J Wang
IEEE/ACM transactions on computational biology and bioinformatics 18 (2 …, 2019
412019
BiXGBoost: a scalable, flexible boosting-based method for reconstructing gene regulatory networks
R Zheng, M Li, X Chen, FX Wu, Y Pan, J Wang
Bioinformatics 35 (11), 1893-1900, 2019
382019
Association of germline variants in natural killer cells with tumor immune microenvironment subtypes, tumor-infiltrating lymphocytes, immunotherapy response, clinical outcomes …
X Xu, J Li, J Zou, X Feng, C Zhang, R Zheng, W Duanmu, A Saha-Mandal, ...
JAMA network open 2 (9), e199292-e199292, 2019
312019
Identification of protein complexes by using a spatial and temporal active protein interaction network
M Li, X Meng, R Zheng, FX Wu, Y Li, Y Pan, J Wang
IEEE/ACM transactions on computational biology and bioinformatics 17 (3 …, 2017
312017
Prioritizing disease genes by using search engine algorithm
M Li, R Zheng, Q Li, J Wang, FX Wu, Z Zhang
Current Bioinformatics 11 (2), 195-202, 2016
242016
MGT-SM: a method for constructing cellular signal transduction networks
M Li, R Zheng, Y Li, FX Wu, J Wang
IEEE/ACM transactions on computational biology and bioinformatics 16 (2 …, 2017
202017
A novel method of gene regulatory network structure inference from gene knock-out expression data
X Chen, M Li, R Zheng, S Zhao, FX Wu, Y Li, J Wang
Tsinghua Science and Technology 24 (4), 446-455, 2019
192019
An ensemble method to reconstruct gene regulatory networks based on multivariate adaptive regression splines
R Zheng, M Li, X Chen, S Zhao, FX Wu, Y Pan, J Wang
IEEE/ACM transactions on computational biology and bioinformatics 18 (1 …, 2019
152019
A data-driven clustering recommendation method for single-cell RNA-sequencing data
Y Tian, R Zheng, Z Liang, S Li, FX Wu, M Li
Tsinghua Science and Technology 26 (5), 772-789, 2021
142021
DPCMNE: detecting protein complexes from protein-protein interaction networks via multi-level network embedding
X Meng, J Xiang, R Zheng, F Wu, M Li
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2021
142021
scGMAI: a Gaussian mixture model for clustering single-cell RNA-Seq data based on deep autoencoder
B Yu, C Chen, R Qi, R Zheng, PJ Skillman-Lawrence, X Wang, A Ma, ...
Briefings in Bioinformatics 22 (4), bbaa316, 2021
132021
An adaptive sparse subspace clustering for cell type identification
R Zheng, Z Liang, X Chen, Y Tian, C Cao, M Li
Frontiers in genetics 11, 407, 2020
102020
NIDM: network impulsive dynamics on multiplex biological network for disease-gene prediction
J Xiang, J Zhang, R Zheng, X Li, M Li
Briefings in Bioinformatics 22 (5), bbab080, 2021
92021
SSRE: cell type detection based on sparse subspace representation and similarity enhancement
Z Liang, M Li, R Zheng, Y Tian, X Yan, J Chen, FX Wu, J Wang
Genomics, proteomics & bioinformatics 19 (2), 282-291, 2021
92021
Key residues influencing binding affinities of 2019-nCoV with ACE2 in different species
S Fang, R Zheng, C Lei, J Wang, R Zheng, M Li
Briefings in bioinformatics 22 (2), 963-975, 2021
82021
KGANCDA: predicting circRNA-disease associations based on knowledge graph attention network
W Lan, Y Dong, Q Chen, R Zheng, J Liu, Y Pan, YPP Chen
Briefings in Bioinformatics 23 (1), bbab494, 2022
62022
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