| Adaptive universal generalized pagerank graph neural network E Chien, J Peng, P Li, O Milenkovic arXiv preprint arXiv:2006.07988, 2020 | 563 | 2020 |
| You are allset: A multiset function framework for hypergraph neural networks E Chien, C Pan, J Peng, O Milenkovic arXiv preprint arXiv:2106.13264, 2021 | 84 | 2021 |
| Multi-motifgan (mmgan): Motif-targeted graph generation and prediction A Gamage, E Chien, J Peng, O Milenkovic ICASSP 2020-2020 IEEE International Conference on Acoustics, Speech and …, 2020 | 17 | 2020 |
| Joint adaptive feature smoothing and topology extraction via generalized pagerank gnns E Chien, J Peng, P Li, O Milenkovic arXiv preprint arXiv:2006.07988, 2020 | 8 | 2020 |
| SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes J Peng, G Serrano, IM Traniello, ME Calleja-Cervantes, UV Chembazhi, ... Communications biology 5 (1), 351, 2022 | 7 | 2022 |
| Linear classifiers in product space forms P Tabaghi, C Pan, E Chien, J Peng, O Milenkovic arXiv preprint arXiv:2102.10204, 2021 | 6 | 2021 |
| Geometry of similarity comparisons P Tabaghi, J Peng, O Milenkovic, I Dokmanić arXiv preprint arXiv:2006.09858, 2020 | 5 | 2020 |
| Online convex matrix factorization with representative regions J Peng, O Milenkovic, A Agarwal Advances in Neural Information Processing Systems 32, 2019 | 5 | 2019 |
| METHCOMP: a special purpose compression platform for DNA methylation data J Peng, O Milenkovic, I Ochoa Bioinformatics 34 (15), 2654-2656, 2018 | 5 | 2018 |
| How fast does the SARS-Cov-2 virus really mutate in heterogeneous populations? V Rana, E Chien, J Peng, O Milenkovic medRxiv, 2020 | 3 | 2020 |
| SimiC: a single cell gene regulatory network inference method with similarity constraints J Peng, UV Chembazhi, S Bangru, IM Traniello, A Kalsotra, I Ochoa, ... BioRxiv, 2020.04. 03.023002, 2020 | 3 | 2020 |
| A single-cell gene regulatory network inference method for identifying complex regulatory dynamics across cell phenotypes J Peng, G Serrano, IM Traniello, ME Calleja-Cervantes, UV Chembazhi, ... | 3 | 2020 |
| Online convex dictionary learning A Agarwal, J Peng, O Milenkovic Advances in Neural Information Processing Systems, 13242-13252, 2019 | 3 | 2019 |
| Provably accurate and scalable linear classifiers in hyperbolic spaces C Pan, E Chien, P Tabaghi, J Peng, O Milenkovic Knowledge and Information Systems 65 (4), 1817-1850, 2023 | 2 | 2023 |
| Inferring single-molecule chromatin interactions via online convex network dictionary learning J Peng, C Pan, H Lyu, M Kim, A Cheng, O Milenkovic bioRxiv, 2022.07. 28.501904, 2022 | 2 | 2022 |
| E2M: A Deep Learning Framework for Associating Combinatorial Methylation Patterns with Gene Expression J Peng, I Ochoa, O Milenkovic bioRxiv, 527044, 2019 | 1 | 2019 |
| Multifaceted roles of cohesin in regulating transcriptional loops M Kim, P Wang, P Clow, I Chien, X Wang, J Peng, H Chai, X Liu, B Lee, ... bioRxiv, 2024.03. 25.586715, 2024 | | 2024 |
| Interpretable Online Network Dictionary Learning for Inferring Long-Range Chromatin Interactions V Rana, J Peng, C Pan, H Lyu, A Cheng, M Kim, O Milenkovic arXiv preprint arXiv:2312.10519, 2023 | | 2023 |
| Small-sample estimation of the mutational support and distribution of SARS-CoV-2 V Rana, E Chien, J Peng, O Milenkovic IEEE/ACM Transactions on Computational Biology and Bioinformatics 20 (1 …, 2022 | | 2022 |
| ROLE OF LEVEL EXPRESSIONS OF CAR IN THE ANTI-TUMOR EFFECTIVENESS OF CART CELLS P Rodriguez-Marquez, ME Calleja-Cervantes, MUP San, A Martin-Mallo, ... HAEMATOLOGICA 105, 80-81, 2020 | | 2020 |
