| A forward chemical genetic screen reveals gut microbiota metabolites that modulate host physiology H Chen, PK Nwe, Y Yang, CE Rosen, AA Bielecka, M Kuchroo, GW Cline, ... Cell 177 (5), 1217-1231. e18, 2019 | 291 | 2019 |
| A reservoir of stem-like CD8+ T cells in the tumor-draining lymph node preserves the ongoing antitumor immune response KA Connolly, M Kuchroo, A Venkat, A Khatun, J Wang, I William, ... Science immunology 6 (64), eabg7836, 2021 | 234 | 2021 |
| Genome-Wide Association Study and Gene Expression Analysis Identifies CD84 as a Predictor of Response to Etanercept Therapy in Rheumatoid Arthritis J Cui, EA Stahl, S Saevarsdottir, C Miceli, D Diogo, G Trynka, T Raj, ... PLoS genetics 9 (3), e1003394, 2013 | 196 | 2013 |
| Common risk alleles for inflammatory diseases are targets of recent positive selection T Raj, M Kuchroo, JM Replogle, S Raychaudhuri, BE Stranger, ... The American Journal of Human Genetics 92 (4), 517-529, 2013 | 133 | 2013 |
| Structural and developmental principles of neuropil assembly in C. elegans MW Moyle, KM Barnes, M Kuchroo, A Gonopolskiy, LH Duncan, ... Nature 591 (7848), 99-104, 2021 | 72 | 2021 |
| An RNA profile identifies two subsets of multiple sclerosis patients differing in disease activity L Ottoboni, BT Keenan, P Tamayo, M Kuchroo, JP Mesirov, GJ Buckle, ... Science translational medicine 4 (153), 153ra131-153ra131, 2012 | 72 | 2012 |
| Multiscale PHATE identifies multimodal signatures of COVID-19 M Kuchroo, J Huang, P Wong, JC Grenier, D Shung, A Tong, C Lucas, ... Nature biotechnology 40 (5), 681-691, 2022 | 57 | 2022 |
| Manifold interpolating optimal-transport flows for trajectory inference G Huguet, DS Magruder, A Tong, O Fasina, M Kuchroo, G Wolf, ... Advances in neural information processing systems 35, 29705-29718, 2022 | 46 | 2022 |
| Single-cell analysis reveals inflammatory interactions driving macular degeneration M Kuchroo, M DiStasio, E Song, E Calapkulu, L Zhang, M Ige, AH Sheth, ... Nature Communications 14 (1), 2589, 2023 | 35 | 2023 |
| Immune cells and their inflammatory mediators modify β cells and cause checkpoint inhibitor–induced diabetes AL Perdigoto, S Deng, KC Du, M Kuchroo, DB Burkhardt, A Tong, G Israel, ... JCI insight 7 (17), 2022 | 28 | 2022 |
| Diffusion earth mover’s distance and distribution embeddings AY Tong, G Huguet, A Natik, K MacDonald, M Kuchroo, R Coifman, ... International Conference on Machine Learning, 10336-10346, 2021 | 22 | 2021 |
| Coarse graining of data via inhomogeneous diffusion condensation N Brugnone, A Gonopolskiy, MW Moyle, M Kuchroo, D van Dijk, KR Moon, ... 2019 IEEE International Conference on Big Data (Big Data), 2624-2633, 2019 | 21 | 2019 |
| Multiscale PHATE exploration of SARS-CoV-2 data reveals multimodal signatures of disease M Kuchroo, J Huang, P Wong, JC Grenier, D Shung, A Tong, C Lucas, ... BioRxiv, 2020.11. 15.383661, 2020 | 17 | 2020 |
| A reservoir of stem-like CD8 (+) T cells in the tumor-draining lymph node preserves the ongoing antitumor immune response. Sci. Immunol. 6, eabg7836 KA Connolly, M Kuchroo, A Venkat, A Khatun, J Wang, I William, ... | 15 | 2021 |
| Multimodal data visualization and denoising with integrated diffusion M Kuchroo, A Godavarthi, A Tong, G Wolf, S Krishnaswamy 2021 IEEE 31st International Workshop on Machine Learning for Signal …, 2021 | 11 | 2021 |
| Embedding signals on graphs with unbalanced diffusion earth mover’s distance A Tong, G Huguet, D Shung, A Natik, M Kuchroo, G Lajoie, G Wolf, ... ICASSP 2022-2022 IEEE International Conference on Acoustics, Speech and …, 2022 | 9 | 2022 |
| Multimodal data visualization, denoising and clustering with integrated diffusion MR Kuchroo, A Godhavarthi, G Wolf, S Krishnaswamy arXiv preprint arXiv:2102.06757, 2021 | 7 | 2021 |
| Topological analysis of single-cell data reveals shared glial landscape of macular degeneration and neurodegenerative diseases M Kuchroo, M DiStasio, E Calapkulu, M Ige, L Zhang, AH Sheth, M Menon, ... Biorxiv, 2021.01. 19.427286, 2021 | 6 | 2021 |
| Time-inhomogeneous diffusion geometry and topology G Huguet, A Tong, B Rieck, J Huang, M Kuchroo, M Hirn, G Wolf, ... SIAM Journal on Mathematics of Data Science 5 (2), 346-372, 2023 | 4 | 2023 |
| Learning transcriptional and regulatory dynamics driving cancer cell plasticity using neural ODE-based optimal transport A Tong, M Kuchroo, S Gupta, A Venkat, BP San Juan, L Rangel, B Zhu, ... bioRxiv, 2023.03. 28.534644, 2023 | 4 | 2023 |
