ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data JH Yang, JH Li, S Jiang, H Zhou, LH Qu Nucleic acids research 41 (D1), D177-D187, 2013 | 351 | 2013 |
Integrating ChIP-seq with other functional genomics data S Jiang, A Mortazavi Briefings in Functional Genomics, 2018 | 104 | 2018 |
A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification D Wyman, G Balderrama-Gutierrez, F Reese, S Jiang, S Rahmanian, ... Biorxiv, 672931, 2019 | 102 | 2019 |
NRSF-dependent epigenetic mechanisms contribute to programming of stress-sensitive neurons by neonatal experience, promoting resilience A Singh-Taylor, J Molet, S Jiang, A Korosi, JL Bolton, Y Noam, K Simeone, ... Molecular psychiatry 23 (3), 648-657, 2018 | 102 | 2018 |
Occupancy maps of 208 chromatin-associated proteins in one human cell type EC Partridge, SB Chhetri, JW Prokop, RC Ramaker, CS Jansen, ST Goh, ... Nature 583 (7818), 720-728, 2020 | 95 | 2020 |
Single-nucleus RNA-seq of differentiating human myoblasts reveals the extent of fate heterogeneity W Zeng, S Jiang, X Kong, N El-Ali, AR Ball Jr, CIH Ma, N Hashimoto, ... Nucleic acids research 44 (21), e158-e158, 2016 | 89 | 2016 |
A limited capacity for microglial repopulation in the adult brain AR Najafi, J Crapser, S Jiang, W Ng, A Mortazavi, BL West, KN Green GLIA, 2018 | 85 | 2018 |
Prevention of C5aR1 signaling delays microglial inflammatory polarization, favors clearance pathways and suppresses cognitive loss MX Hernandez, S Jiang, TA Cole, SH Chu, MI Fonseca, MJ Fang, ... Molecular neurodegeneration 12 (1), 66, 2017 | 73 | 2017 |
Generation of a humanized Aβ expressing mouse demonstrating aspects of Alzheimer’s disease-like pathology D Baglietto-Vargas, S Forner, L Cai, AC Martini, L Trujillo-Estrada, ... Nature communications 12 (1), 2421, 2021 | 72 | 2021 |
Single-nucleus RNA-seq identifies divergent populations of FSHD2 myotube nuclei S Jiang, K Williams, X Kong, W Zeng, NV Nguyen, X Ma, R Tawil, ... PLoS genetics 16 (5), e1008754, 2020 | 29 | 2020 |
Subventricular zone/white matter microglia reconstitute the empty adult microglial niche in a dynamic wave LA Hohsfield, AR Najafi, Y Ghorbanian, N Soni, J Crapser, DXF Velez, ... Elife 10, e66738, 2021 | 28 | 2021 |
Unexpected transcriptional programs contribute to hippocampal memory deficits and neuronal stunting after early-life adversity JL Bolton, A Schulmann, MM Garcia-Curran, L Regev, Y Chen, N Kamei, ... Cell reports 33 (11), 2020 | 28 | 2020 |
Intra-individual methylomics detects the impact of early-life adversity S Jiang, N Kamei, JL Bolton, X Ma, HS Stern, TZ Baram, A Mortazavi Life science alliance 2 (2), 2019 | 15 | 2019 |
Signalling by senescent melanocytes hyperactivates hair growth X Wang, R Ramos, AQ Phan, K Yamaga, JL Flesher, S Jiang, JW Oh, ... Nature 618 (7966), 808-817, 2023 | 12 | 2023 |
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity F Reese, B Williams, G Balderrama-Gutierrez, D Wyman, MH Çelik, ... bioRxiv, 2023 | 11 | 2023 |
Systematic discovery and functional dissection of enhancers needed for cancer cell fitness and proliferation PB Chen, PC Fiaux, K Zhang, B Li, N Kubo, S Jiang, R Hu, E Rooholfada, ... Cell reports 41 (6), 2022 | 10 | 2022 |
Linking Chromosomal Silencing With Xist Expression From Autosomal Integrated Transgenes I Naciri, B Lin, CH Webb, S Jiang, S Carmona, W Liu, A Mortazavi, S Sun Frontiers in Cell and Developmental Biology 9, 693154, 2021 | 6 | 2021 |
Discovery and Functional Characterization of Pro-growth Enhancers in Human Cancer Cells PB Chen, PC Fiaux, B Li, K Zhang, N Kubo, S Jiang, R Hu, S Wu, M Wang, ... bioRxiv, 2021.02. 04.429675, 2021 | 2 | 2021 |
Gene expression and cell-free dna methods and systems for disease detection L Weng, M Faham, J Wu, S Jiang US Patent US20240117443A1, 2024 | | 2024 |
Comparative Chromatin Dynamics of Stem Cell Differentiation in Human and Rat CW Thai, S Jiang, Y Roxas, C McGill, S Ma, A Mortazavi bioRxiv, 2021.02. 11.430819, 2021 | | 2021 |