Michael Zuker
Michael Zuker
Rensselaer Polytechnic Institute
Verified email at alum.mit.edu - Homepage
Cited by
Cited by
Mfold web server for nucleic acid folding and hybridization prediction
M Zuker
Nucleic acids research 31 (13), 3406-3415, 2003
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
DH Mathews, J Sabina, M Zuker, DH Turner
Journal of molecular biology 288 (5), 911-940, 1999
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
M Zuker, P Stiegler
Nucleic acids research 9 (1), 133-148, 1981
On finding all suboptimal foldings of an RNA molecule
M Zuker
Science 244 (4900), 48-52, 1989
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
DH Mathews, MD Disney, JL Childs, SJ Schroeder, M Zuker, DH Turner
Proceedings of the National Academy of Sciences 101 (19), 7287-7292, 2004
Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide
M Zuker, DH Mathews, DH Turner
RNA biochemistry and biotechnology, 11-43, 1999
Improved predictions of secondary structures for RNA
JA Jaeger, DH Turner, M Zuker
Proceedings of the National Academy of Sciences 86 (20), 7706-7710, 1989
NR Markham, M Zuker
Bioinformatics, 3-31, 2008
DINAMelt web server for nucleic acid melting prediction
NR Markham, M Zuker
Nucleic acids research 33 (suppl_2), W577-W581, 2005
RNA secondary structures and their prediction
M Zuker, D Sankoff
Bulletin of mathematical biology 46 (4), 591-621, 1984
Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding
AE Walter, DH Turner, J Kim, MH Lyttle, P Müller, DH Mathews, M Zuker
Proceedings of the National Academy of Sciences 91 (20), 9218-9222, 1994
MicroRNA-responsive'sensor'transgenes uncover Hox-like and other developmentally regulated patterns of vertebrate microRNA expression
JH Mansfield, BD Harfe, R Nissen, J Obenauer, J Srineel, A Chaudhuri, ...
Nature genetics 36 (10), 1079-1083, 2004
[17] Predicting optimal and suboptimal secondary structure for RNA
JA Jaeger, DH Turner, M Zuker
Academic Press 183, 281-306, 1990
[20] Computer prediction of RNA structure
M Zuker
Methods in enzymology 180, 262-288, 1989
OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach
JM Rouillard, M Zuker, E Gulari
Nucleic acids research 31 (12), 3057-3062, 2003
Secondary structure of the Tetrahymena ribosomal RNA intervening sequence: structural homology with fungal mitochondrial intervening sequences
TR Cech, NK Tanner, I Tinoco, BR Weir, M Zuker, PS Perlman
Proceedings of the National Academy of Sciences 80 (13), 3903-3907, 1983
Calculating nucleic acid secondary structure
M Zuker
Current opinion in structural biology 10 (3), 303-310, 2000
Testing the exon theory of genes: the evidence from protein structure
A Stoltzfus, DF Spencer, M Zuker, JM Logsdon, WF Doolittle
Science 265 (5169), 202-207, 1994
Prediction of hybridization and melting for double-stranded nucleic acids
RA Dimitrov, M Zuker
Biophysical Journal 87 (1), 215-226, 2004
Prediction of RNA secondary structure by energy minimization
M Zuker
Computer analysis of sequence data, 267-294, 1994
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