| The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-aryamontri, ... BMC Bioinformatics 12 (Suppl 8), S3, 2011 | 181 | 2011 |
| Extracting drug–drug interactions from literature using a rich feature-based linear kernel approach S Kim, H Liu, L Yeganova, WJ Wilbur Journal of Biomedical Informatics 55, 23-30, 2015 | 158 | 2015 |
| Introducing meta-services for biomedical information extraction F Leitner, M Krallinger, C Rodriguez-Penagos, J Hakenberg, C Plake, ... Genome Biology 9 (Suppl 2), S6, 2008 | 94 | 2008 |
| Author name disambiguation for PubMed W Liu, R Islamaj Doğan, S Kim, DC Comeau, W Kim, L Yeganova, Z Lu, ... Journal of the Association for Information Science and Technology 65 (4 …, 2014 | 92 | 2014 |
| PIE: an online prediction system for protein–protein interactions from text S Kim, SY Shin, IH Lee, SJ Kim, R Sriram, BT Zhang Nucleic Acids Research 36 (Suppl 2), W411-W415, 2008 | 91 | 2008 |
| Genetic mining of HTML structures for effective web-document retrieval S Kim, BT Zhang Applied Intelligence 18 (3), 243-256, 2003 | 70 | 2003 |
| Bridging the gap: incorporating a semantic similarity measure for effectively mapping PubMed queries to documents S Kim, N Fiorini, WJ Wilbur, Z Lu Journal of Biomedical Informatics 75, 122-127, 2017 | 61* | 2017 |
| PIE the search: searching PubMed literature for protein interaction information S Kim, D Kwon, SY Shin, WJ Wilbur Bioinformatics 28 (4), 597-598, 2012 | 45 | 2012 |
| Classifying protein-protein interaction articles using word and syntactic features S Kim, WJ Wilbur BMC Bioinformatics 12 (Suppl 8), S9, 2011 | 44 | 2011 |
| Meshable: searching PubMed abstracts by utilizing MeSH and MeSH-derived topical terms S Kim, L Yeganova, WJ Wilbur Bioinformatics, 2016 | 41 | 2016 |
| Web document retrieval by genetic learning of importance factors for html tags S Kim, BT Zhang The PRICAI-2000 Workshop on Text and Web Mining, 13-23, 2000 | 39 | 2000 |
| Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine R Islamaj Doğan, S Kim, A Chatr-aryamontri, CH Wei, DC Comeau, ... Database 2019, bay147, 2019 | 38 | 2019 |
| Assisting manual literature curation for protein–protein interactions using BioQRator D Kwon, S Kim, SY Shin, A Chatr-aryamontri, WJ Wilbur Database 2014, bau067, 2014 | 38 | 2014 |
| A fast deep learning model for textual relevance in biomedical information retrieval S Mohan, N Fiorini, S Kim, Z Lu The Web Conference (WWW 2018), 77-86, 2018 | 36 | 2018 |
| The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions R Islamaj Doğan, S Kim, A Chatr-Aryamontri, CS Chang, R Oughtred, ... Database 2017, baw147, 2017 | 36 | 2017 |
| NLM-Chem, a new resource for chemical entity recognition in PubMed full text literature R Islamaj, R Leaman, S Kim, D Kwon, CH Wei, DC Comeau, Y Peng, ... Scientific Data 8, 91, 2021 | 35 | 2021 |
| BioConceptVec: creating and evaluating literature-based biomedical concept embeddings on a large scale Q Chen, K Lee, S Yan, S Kim, CH Wei, Z Lu PLOS Computational Biology 16 (4), e1007617, 2020 | 35 | 2020 |
| TeamTat: a collaborative text annotation tool R Islamaj, D Kwon, S Kim, Z Lu Nucleic Acids Research 48, W5-W11, 2020 | 34 | 2020 |
| BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID S Kim, R Islamaj Doğan, A Chatr-Aryamontri, CS Chang, R Oughtred, ... Database 2016, baw121, 2016 | 33 | 2016 |
| LitSense: making sense of biomedical literature at sentence level A Allot, Q Chen, S Kim, R Vera Alvarez, DC Comeau, WJ Wilbur, Z Lu Nucleic Acids Research 47, W594-W599, 2019 | 31 | 2019 |
W John WilburSenior scientist, National Center for Biotechnology InformationVerified email at ncbi.nlm.nih.gov
