| scTenifoldKnk: an efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation D Osorio, Y Zhong, G Li, Q Xu, Y Yang, Y Tian, RS Chapkin, JZ Huang, ... Patterns 3 (3), 2022 | 20* | 2022 |
| Hepatocyte adenosine kinase promotes excessive fat deposition and liver inflammation H Li, J Zheng, Q Xu, Y Yang, J Zhou, X Guo, Y Cai, JJ Cai, L Xie, J Awika, ... Gastroenterology 164 (1), 134-146, 2023 | 11 | 2023 |
| scTenifoldXct: a semi-supervised method for predicting cell-cell interactions and mapping cellular communication graphs Y Yang, G Li, Y Zhong, Q Xu, YT Lin, C Roman-Vicharra, RS Chapkin, ... Cell Systems 14 (4), 302-311. e4, 2023 | 10 | 2023 |
| Single-cell RNA sequencing reveals how the aryl hydrocarbon receptor shapes cellular differentiation potency in the mouse colon Y Yang, D Osorio, LA Davidson, H Han, DA Mullens, A Jayaraman, S Safe, ... Cancer Prevention Research 15 (1), 17-28, 2022 | 8 | 2022 |
| Association of pyroptosis and severeness of COVID-19 as revealed by integrated single-cell transcriptome data analysis Q Xu, Y Yang, X Zhang, JJ Cai ImmunoInformatics 6, 100013, 2022 | 7 | 2022 |
| Gene knockout inference with variational graph autoencoder learning single-cell gene regulatory networks Y Yang, G Li, Y Zhong, Q Xu, BJ Chen, YT Lin, RS Chapkin, JJ Cai Nucleic Acids Research 51 (13), 6578-6592, 2023 | 4 | 2023 |
| scInTime: a computational method leveraging single-cell trajectory and gene regulatory networks to identify master regulators of cellular differentiation Q Xu, G Li, D Osorio, Y Zhong, Y Yang, YT Lin, X Zhang, JJ Cai Genes 13 (2), 371, 2022 | 4 | 2022 |
| Fabrication methods for a gel-based separation-free device for whole blood glucose detection H Zhang, Y Yang, J Dai, A Han MethodsX 8, 101236, 2021 | 2 | 2021 |
| Cartridge, detection method, and detection device Y Yang, N Tomoyuki, S Tomoda, K Horii US Patent 11,511,246, 2022 | 1 | 2022 |
| Controlled Noise: Evidence of Epigenetic Regulation of Single-Cell Expression Variability Y Zhong, S Cui, Y Yang, JJ Cai bioRxiv, 2024.04. 10.588957, 2024 | | 2024 |
| Interpretable modeling of time-resolved single-cell gene–protein expression with CrossmodalNet Y Yang, YT Lin, G Li, Y Zhong, Q Xu, JJ Cai Briefings in Bioinformatics 24 (6), bbad342, 2023 | | 2023 |
| Interpretable modeling of time-resolved single-cell gene-protein expression using CrossmodalNet Y Yang, YT Lin, G Li, Y Zhong, Q Xu, JJ Cai bioRxiv, 2023.05. 16.541011, 2023 | | 2023 |
| Aryl Hydrocarbon Receptor (AhR) Signaling in Colonic Cells and Tumors S Safe, H Han, A Jayaraman, LA Davidson, CD Allred, I Ivanov, Y Yang, ... Receptors 2 (1), 93-99, 2023 | | 2023 |
James J CaiProfessor, Texas A&M UniversityVerified email at tamu.edu
