Jianyi Yang
Jianyi Yang
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The I-TASSER Suite: protein structure and function prediction
J Yang, R Yan, A Roy, D Xu, J Poisson, Y Zhang
Nature methods 12 (1), 7-8, 2015
I-TASSER server: new development for protein structure and function predictions
J Yang, Y Zhang
Nucleic acids research 43 (W1), W174-W181, 2015
Improved protein structure prediction using predicted interresidue orientations
J Yang, I Anishchenko, H Park, Z Peng, S Ovchinnikov, D Baker
Proceedings of the National Academy of Sciences, 2020
Protein–ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment
J Yang, A Roy, Y Zhang
Bioinformatics 29 (20), 2588-2595, 2013
COFACTOR: an accurate comparative algorithm for structure-based protein function annotation
A Roy, J Yang, Y Zhang
Nucleic acids research 40 (W1), W471-W477, 2012
BioLiP: a semi-manually curated database for biologically relevant ligand–protein interactions
J Yang, A Roy, Y Zhang
Nucleic acids research 41 (D1), D1096-D1103, 2013
Protein Structure and Function Prediction Using I‐TASSER
J Yang, Y Zhang
Current Protocols in Bioinformatics, 5.8. 1-5.8. 15, 2015
The trRosetta server for fast and accurate protein structure prediction
Z Du, H Su, W Wang, L Ye, H Wei, Z Peng, I Anishchenko, D Baker, ...
Nature protocols 16 (12), 5634-5651, 2021
PotentialNet for Molecular Property Prediction
EN Feinberg, D Sur, Z Wu, BE Husic, H Mai, Y Li, S Sun, J Yang, ...
ACS Central Science 4 (11), 1520-1530, 2018
A comparative assessment and analysis of 20 representative sequence alignment methods for protein structure prediction
R Yan, D Xu, J Yang, S Walker, Y Zhang
Scientific reports 3, 2619, 2013
COACH-D: improved protein–ligand binding sites prediction with refined ligand-binding poses through molecular docking
Q Wu, Z Peng, Y Zhang, J Yang
Nucleic acids research 46 (W1), W438-W442, 2018
GPCR-I-TASSER: A Hybrid Approach to G Protein-Coupled Receptor Structure Modeling and the Application to the Human Genome
J Zhang, J Yang, R Jang, Y Zhang
Structure 23 (8), 1538-1549, 2015
Advances in GPCR Modeling Evaluated by the GPCR Dock 2013 Assessment: Meeting New Challenges
I Kufareva, V Katritch, RC Stevens, R Abagyan
Structure 22 (8), 1120-1139, 2014
ResQ: An approach to unified estimation of B-factor and residue-specific error in protein structure prediction
J Yang, Y Wang, Y Zhang
Journal of molecular biology 428 (4), 693-701, 2016
Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
JY Yang, ZL Peng, ZG Yu, RJ Zhang, V Anh, D Wang
Journal of theoretical biology 257 (4), 618-626, 2009
Recognizing metal and acid radical ion-binding sites by integrating ab initio modeling with template-based transferals
X Hu, Q Dong, J Yang, Y Zhang
Bioinformatics 32 (21), 3260-3269, 2016
GLASS: a comprehensive database for experimentally validated GPCR-ligand associations
WKB Chan, H Zhang, J Yang, JR Brender, J Hur, A Özgür, Y Zhang
Bioinformatics 31 (18), 3035-3042, 2015
Prediction of protein structural classes for low-homology sequences based on predicted secondary structure
JY Yang, ZL Peng, X Chen
BMC bioinformatics 11 (Suppl 1), S9, 2010
Integration of QUARK and I‐TASSER for Ab Initio Protein Structure Prediction in CASP11
W Zhang, J Yang, B He, SE Walker, H Zhang, B Govindarajoo, J Virtanen, ...
Proteins: Structure, Function, and Bioinformatics 84 (S1), 76-86, 2016
Protein contact prediction using metagenome sequence data and residual neural networks
Q Wu, Z Peng, I Anishchenko, Q Cong, D Baker, J Yang
Bioinformatics 36 (1), 41-48, 2020
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