| SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012 | 19759 | 2012 |
| QUAST: quality assessment tool for genome assemblies A Gurevich, V Saveliev, N Vyahhi, G Tesler Bioinformatics 29 (8), 1072-1075, 2013 | 6733 | 2013 |
| Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013 | 1109 | 2013 |
| Assembling genomes and mini-metagenomes from highly chimeric reads S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Research in Computational Molecular Biology: 17th Annual International …, 2013 | 766* | 2013 |
| Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 668 | 2017 |
| Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature methods 17 (9), 905-908, 2020 | 631 | 2020 |
| Versatile genome assembly evaluation with QUAST-LG A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich Bioinformatics 34 (13), i142-i150, 2018 | 618 | 2018 |
| MetaQUAST: evaluation of metagenome assemblies A Mikheenko, V Saveliev, A Gurevich Bioinformatics 32 (7), 1088-1090, 2016 | 467 | 2016 |
| metaFlye: scalable long-read metagenome assembly using repeat graphs M Kolmogorov, DM Bickhart, B Behsaz, A Gurevich, M Rayko, SB Shin, ... Nature Methods 17 (11), 1103-1110, 2020 | 357 | 2020 |
| Dereplication of microbial metabolites through database search of mass spectra H Mohimani, A Gurevich, A Shlemov, A Mikheenko, A Korobeynikov, ... Nature communications 9 (1), 4035, 2018 | 208 | 2018 |
| Dereplication of peptidic natural products through database search of mass spectra H Mohimani, A Gurevich, A Mikheenko, N Garg, LF Nothias, A Ninomiya, ... Nature chemical biology 13 (1), 30-37, 2017 | 199 | 2017 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 128 | 2022 |
| ExSPAnder: a universal repeat resolver for DNA fragment assembly AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ... Bioinformatics 30 (12), i293-i301, 2014 | 111 | 2014 |
| Icarus: visualizer for de novo assembly evaluation A Mikheenko, G Valin, A Prjibelski, V Saveliev, A Gurevich Bioinformatics 32 (21), 3321-3323, 2016 | 102 | 2016 |
| Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra A Gurevich, A Mikheenko, A Shlemov, A Korobeynikov, H Mohimani, ... Nature microbiology 3 (3), 319-327, 2018 | 77 | 2018 |
| MetaMiner: a scalable peptidogenomics approach for discovery of ribosomal peptide natural products with blind modifications from microbial communities L Cao, A Gurevich, KL Alexander, CB Naman, T Leão, E Glukhov, ... Cell systems 9 (6), 600-608. e4, 2019 | 57 | 2019 |
| MolDiscovery: Learning mass spectrometry fragmentation of small molecules L Cao, M Guler, A Tagirdzhanov, YY Lee, A Gurevich, H Mohimani Nature communications 12 (1), 3718, 2021 | 53 | 2021 |
| Assembling short reads from jumping libraries with large insert sizes I Vasilinetc, AD Prjibelski, A Gurevich, A Korobeynikov, PA Pevzner Bioinformatics 31 (20), 3262-3268, 2015 | 53 | 2015 |
| TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats A Mikheenko, AV Bzikadze, A Gurevich, KH Miga, PA Pevzner Bioinformatics 36 (Supplement_1), i75-i83, 2020 | 44* | 2020 |
| De novo peptide sequencing reveals many cyclopeptides in the human gut and other environments B Behsaz, H Mohimani, A Gurevich, A Prjibelski, M Fisher, F Vargas, ... Cell systems 10 (1), 99-108. e5, 2020 | 39 | 2020 |
Pavel PevznerProfessor of Computer Science, University of California at San DiegoVerified email at eng.ucsd.edu
