Follow
Naoto Hori
Naoto Hori
School of Pharmacy, University of Nottingham
Verified email at nottingham.ac.uk - Homepage
Title
Cited by
Cited by
Year
CafeMol: A coarse-grained biomolecular simulator for simulating proteins at work
H Kenzaki, N Koga, N Hori, R Kanada, W Li, K Okazaki, XQ Yao, ...
Journal of Chemical Theory and Computation 7 (6), 1979-1989, 2011
2132011
Folding energy landscape and network dynamics of small globular proteins
N Hori, G Chikenji, RS Berry, S Takada
Proceedings of the National Academy of Sciences 106 (1), 73-78, 2009
642009
Sequence-dependent Three Interaction Site Model for Single- and Double-stranded DNA
D Chakraborty, N Hori, D Thirumalai
Journal of Chemical Theory and Computation 14 (7), 3763–3779, 2018
542018
Theory and simulations for RNA folding in mixtures of monovalent and divalent cations
HT Nguyen, N Hori, D Thirumalai
Proceedings of the National Academy of Sciences 116 (42), 21022-21030, 2019
462019
Coarse-Grained Structure-Based Model for RNA-Protein Complexes Developed by Fluctuation Matching
N Hori, S Takada
Journal of Chemical Theory and Computation 8 (9), 3384–3394, 2012
432012
Multiscale methods for protein folding simulations
W Li, H Yoshii, N Hori, T Kameda, S Takada
Methods 52 (1), 106-114, 2010
362010
Condensates in RNA repeat sequences are heterogeneously organized and exhibit reptation dynamics
HT Nguyen, N Hori, D Thirumalai
Nature Chemistry 14, 775-785, 2022
302022
Ion Condensation onto Ribozyme Is Site-Specific and Fold-Dependent
N Hori, NA Denesyuk, D Thirumalai
Biophysical Journal 116 (12), 2400-2410, 2019
272019
Protein collapse is encoded in the folded state architecture
HS Samanta, PI Zhuravlev, M Hinczewski, N Hori, S Chakrabarti, ...
Soft Matter 13 (19), 3622-3638, 2017
272017
Salt Effects on the Thermodynamics of a Frameshifting RNA Pseudoknot under Tension
N Hori, NA Denesyuk, D Thirumalai
Journal of Molecular Biology 428 (14), 2847-2859, 2016
262016
Monovalent ions modulate the flux through multiple folding pathways of an RNA pseudoknot
J Roca, N Hori, S Baral, Y Velmurugu, R Narayanan, P Narayanan, ...
Proceedings of the National Academy of Sciences 115 (31), E7313-E7322, 2018
242018
How co-translational folding of multi-domain protein is affected by elongation schedule: molecular simulations
T Tanaka, N Hori, S Takada
PLoS Computational Biology 11 (7), e1004356, 2015
232015
Molecular simulations of ion effects on the thermodynamics of RNA folding
NA Denesyuk, N Hori, D Thirumalai
The Journal of Physical Chemistry B 122 (50), 11860-11867, 2018
222018
Shape changes and cooperativity in the folding of the central domain of the 16S ribosomal RNA
N Hori, NA Denesyuk, D Thirumalai
Proceedings of the National Academy of Sciences 118 (10), e2020837118, 2021
192021
Recognize online handwritten bangla characters using hausdorff distance-based feature
S Sen, R Sarkar, K Roy, N Hori
Proceedings of the 5th International Conference on Frontiers in Intelligent …, 2017
162017
Frictional Effects on RNA Folding: Speed Limit and Kramers Turnover
N Hori, NA Denesyuk, D Thirumalai
Journal of Physical Chemistry B 122 (49), 11279-11288, 2018
122018
Handwritten Devanagari numerals recognition using grid based Hausdroff distance
S Bhowmik, S Sen, N Hori, R Sarkar, M Nasipuri
Computer, Communication and Electrical Technology, 15-18, 2017
72017
Odd–even disparity in the population of slipped hairpins in RNA repeat sequences with implications for phase separation
H Maity, HT Nguyen, N Hori, D Thirumalai
Proceedings of the National Academy of Sciences 120 (24), e2301409120, 2023
32023
TIS2AA (2017)
N Hori
32020
Watching ion-driven kinetics of ribozyme folding and misfolding caused by energetic and topological frustration one molecule at a time
N Hori, D Thirumalai
Nucleic Acids Research 51 (19), 10737-10751, 2023
22023
The system can't perform the operation now. Try again later.
Articles 1–20