| Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics K Morita, F Wang, K Jahn, T Hu, T Tanaka, Y Sasaki, J Kuipers, S Loghavi, ... Nature communications 11 (1), 5327, 2020 | 324 | 2020 |
| Tree inference for single-cell data K Jahn, J Kuipers, N Beerenwinkel Genome biology 17 (1), 86, 2016 | 310 | 2016 |
| Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data S Malikic, K Jahn, J Kuipers, SC Sahinalp, N Beerenwinkel Nature communications 10 (1), 2750, 2019 | 137 | 2019 |
| Using directed acyclic graphs in epidemiological research in psychosis: an analysis of the role of bullying in psychosis G Moffa, G Catone, J Kuipers, E Kuipers, D Freeman, S Marwaha, ... Schizophrenia bulletin 43 (6), 1273-1279, 2017 | 137 | 2017 |
| Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors J Kuipers, K Jahn, BJ Raphael, N Beerenwinkel Genome research 27 (11), 1885-1894, 2017 | 136 | 2017 |
| Advances in understanding tumour evolution through single-cell sequencing J Kuipers, K Jahn, N Beerenwinkel Biochimica et Biophysica Acta (BBA)-Reviews on Cancer 1867 (2), 127-138, 2017 | 132 | 2017 |
| Statistical benchmark for BosonSampling M Walschaers, J Kuipers, JD Urbina, K Mayer, MC Tichy, K Richter, ... New Journal of Physics 18 (3), 032001, 2016 | 115 | 2016 |
| The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support A Irmisch, X Bonilla, S Chevrier, KV Lehmann, F Singer, NC Toussaint, ... Cancer cell 39 (3), 288-293, 2021 | 107 | 2021 |
| Single-cell mutation identification via phylogenetic inference J Singer, J Kuipers, K Jahn, N Beerenwinkel Nature communications 9 (1), 5144, 2018 | 104 | 2018 |
| Partition MCMC for inference on acyclic digraphs J Kuipers, G Moffa Journal of the American Statistical Association 112 (517), 282-299, 2017 | 99 | 2017 |
| Efficient sampling and structure learning of Bayesian networks J Kuipers, P Suter, G Moffa Journal of Computational and Graphical Statistics 31 (3), 639-650, 2022 | 80* | 2022 |
| Addendum on the scoring of Gaussian directed acyclic graphical models J Kuipers, G Moffa, D Heckerman | 75 | 2014 |
| Nucleated dwarf elliptical galaxies in the Virgo cluster NI Grant, JA Kuipers, S Phillipps Monthly Notices of the Royal Astronomical Society 363 (3), 1019-1030, 2005 | 61 | 2005 |
| Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers AL Hofmann, J Behr, J Singer, J Kuipers, C Beisel, P Schraml, H Moch, ... BMC bioinformatics 18, 1-15, 2017 | 52 | 2017 |
| SCIM: universal single-cell matching with unpaired feature sets SG Stark, J Ficek, F Locatello, X Bonilla, S Chevrier, F Singer, G Rätsch, ... Bioinformatics 36 (Supplement_2), i919-i927, 2020 | 51 | 2020 |
| Single-cell copy number calling and event history reconstruction J Kuipers, MA Tuncel, PF Ferreira, K Jahn, N Beerenwinkel BioRxiv, 2020.04. 28.065755, 2020 | 49 | 2020 |
| Tracing clonal dynamics reveals that two-and three-dimensional patient-derived cell models capture tumor heterogeneity of clear cell renal cell carcinoma HA Bolck, C Corrò, A Kahraman, A von Teichman, NC Toussaint, ... European urology focus 7 (1), 152-162, 2021 | 48 | 2021 |
| Links between psychotic and neurotic symptoms in the general population: an analysis of longitudinal British National Survey data using Directed Acyclic Graphs J Kuipers, G Moffa, E Kuipers, D Freeman, P Bebbington Psychological Medicine 49 (3), 388-395, 2019 | 44 | 2019 |
| Bayesian Structure Learning and Sampling of Bayesian Networks with the R Package BiDAG P Suter, J Kuipers, G Moffa, N Beerenwinkel Journal of Statistical Software 105, 1-31, 2023 | 41 | 2023 |
| pathTiMEx: joint inference of mutually exclusive cancer pathways and their progression dynamics S Cristea, J Kuipers, N Beerenwinkel Journal of Computational Biology 24 (6), 603-615, 2017 | 41 | 2017 |
Niko BeerenwinkelProfessor of Computational Biology, ETH ZurichVerified email at bsse.ethz.ch
