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Sergio Pantano
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Amber 2021
DA Case, HM Aktulga, K Belfon, I Ben-Shalom, SR Brozell, DS Cerutti, ...
University of California, San Francisco, 2021
56442021
Human, Drosophila, and C. elegans TDP43: Nucleic Acid Binding Properties and Splicing Regulatory Function
YM Ayala, S Pantano, A D'Ambrogio, E Buratti, A Brindisi, C Marchetti, ...
Journal of molecular biology 348 (3), 575-588, 2005
4402005
AmberTools
DA Case, HM Aktulga, K Belfon, DS Cerutti, GA Cisneros, VWD Cruzeiro, ...
Journal of chemical information and modeling 63 (20), 6183-6191, 2023
3212023
SNARE complexes and neuroexocytosis: how many, how close?
C Montecucco, G Schiavo, S Pantano
Trends in biochemical sciences 30 (7), 367-372, 2005
2332005
FRET biosensor uncovers cAMP nano-domains at β-adrenergic targets that dictate precise tuning of cardiac contractility
NC Surdo, M Berrera, A Koschinski, M Brescia, MR Machado, C Carr, ...
Nature communications 8 (1), 15031, 2017
2002017
SIRAH: a structurally unbiased coarse-grained force field for proteins with aqueous solvation and long-range electrostatics
L Darré, MR Machado, AF Brandner, HC González, S Ferreira, S Pantano
Journal of chemical theory and computation 11 (2), 723-739, 2015
1782015
A coarse grained model for atomic-detailed DNA simulations with explicit electrostatics
PD Dans, A Zeida, MR Machado, S Pantano
Journal of chemical theory and computation 6 (5), 1711-1725, 2010
1632010
Crystal structure of peach Pru p 3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens
N Pasquato, R Berni, C Folli, S Folloni, M Cianci, S Pantano, JR Helliwell, ...
Journal of molecular biology 356 (3), 684-694, 2006
1582006
Another coarse grain model for aqueous solvation: WAT FOUR?
L Darré, MR Machado, PD Dans, FE Herrera, S Pantano
Journal of Chemical Theory and Computation 6 (12), 3793-3807, 2010
1542010
The SIRAH 2.0 force field: altius, fortius, citius
MR Machado, EE Barrera, F Klein, M Sóñora, S Silva, S Pantano
Journal of chemical theory and computation 15 (4), 2719-2733, 2019
1392019
The blockade of the neurotransmitter release apparatus by botulinum neurotoxins
S Pantano, C Montecucco
Cellular and molecular life sciences 71, 793-811, 2014
1392014
SIRAH tools: mapping, backmapping and visualization of coarse-grained models
MR Machado, S Pantano
Bioinformatics 32 (10), 1568-1570, 2016
1212016
Improvement of a FRET-based indicator for cAMP by linker design and stabilization of donor–acceptor interaction
V Lissandron, A Terrin, M Collini, L D'alfonso, G Chirico, S Pantano, ...
Journal of molecular biology 354 (3), 546-555, 2005
962005
Pathogenetic role of the deafness-related M34T mutation of Cx26
M Bicego, M Beltramello, S Melchionda, M Carella, V Piazza, L Zelante, ...
Human molecular genetics 15 (17), 2569-2587, 2006
932006
Split the charge difference in two! A rule of thumb for adding proper amounts of ions in MD simulations
MR Machado, S Pantano
Journal of Chemical Theory and Computation 16 (3), 1367-1372, 2020
862020
Unitary permeability of gap junction channels to second messengers measured by FRET microscopy
VH Hernandez, M Bortolozzi, V Pertegato, M Beltramello, M Giarin, ...
Nature Methods 4 (4), 353-358, 2007
852007
Dimerization confers increased stability to nucleases in 5′ halves from glycine and glutamic acid tRNAs
JP Tosar, F Gámbaro, L Darré, S Pantano, E Westhof, A Cayota
Nucleic acids research 46 (17), 9081-9093, 2018
742018
A hybrid all-atom/coarse grain model for multiscale simulations of DNA
MR Machado, PD Dans, S Pantano
Physical Chemistry Chemical Physics 13 (40), 18134-18144, 2011
592011
Transferable mixing of atomistic and coarse-grained water models
HC Gonzalez, L Darré, S Pantano
The Journal of Physical Chemistry B 117 (46), 14438-14448, 2013
572013
Cloning, characterization and subcellular localization of a Trypanosoma cruzi argonaute protein defining a new subfamily distinctive of trypanosomatids
MRG Silva, JP Tosar, M Frugier, S Pantano, B Bonilla, L Esteban, E Serra, ...
Gene 466 (1-2), 26-35, 2010
572010
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