| Host and infectivity prediction of Wuhan 2019 novel coronavirus using deep learning algorithm H Zhu, Q Guo, M Li, C Wang, Z Fang, P Wang, J Tan, S Wu, Y Xiao BioRxiv, 2020 | 174 | 2020 |
| PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning Z Fang, J Tan, S Wu, M Li, C Xu, Z Xie, H Zhu GigaScience 8 (6), giz066, 2019 | 130 | 2019 |
| DeePhage: distinguishing virulent and temperate phage-derived sequences in metavirome data with a deep learning approach S Wu, Z Fang, J Tan, M Li, C Wang, Q Guo, C Xu, X Jiang, H Zhu GigaScience 10 (9), giab056, 2021 | 35 | 2021 |
| Hophage: an ab initio tool for identifying hosts of phage fragments from metaviromes J Tan, Z Fang, S Wu, Q Guo, X Jiang, H Zhu Bioinformatics, 2021 | 19 | 2021 |
| More Positive or More Negative? Metagenomic Analysis Reveals Roles of Virome in Human Disease-Related Gut Microbiome M Li, C Wang, Q Guo, C Xu, Z Xie, J Tan, S Wu, P Wang, J Guo, Z Fang, ... Frontiers in Cellular and Infection Microbiology 12, 846063, 2022 | 9 | 2022 |
| PlasGUN: gene prediction in plasmid metagenomic short reads using deep learning Z Fang, J Tan, S Wu, M Li, C Wang, Y Liu, H Zhu Bioinformatics 36 (10), 3239-3241, 2020 | 9 | 2020 |
| Predicting hosts based on early SARS-CoV-2 samples and analyzing the 2020 pandemic Q Guo, M Li, C Wang, J Guo, X Jiang, J Tan, S Wu, P Wang, T Xiao, ... Scientific reports 11 (1), 1-13, 2021 | 6 | 2021 |
| Distinguish virulent and temperate phage-derived sequences in metavirome data with a deep learning approach S Wu, Z Fang, J Tan, M Li, C Wang, Q Guo, C Xu, X Jiang, H Zhu bioRxiv, 2020 | 2 | 2020 |
| Predicting hosts based on early SARS-CoV-2 samples and analyzing later world-wide pandemic in 2020 Q Guo, M Li, C Wang, J Guo, X Jiang, J Tan, S Wu, P Wang, T Xiao, ... bioRxiv, 2021 | 1 | 2021 |
| IPEV: Identification of Prokaryotic and Eukaryotic Virus-derived sequences in virome using deep learning H Yin, S Wu, J Tan, Q Guo, M Li, X Jiang, H Zhu bioRxiv, 2023.05. 28.541705, 2023 | | 2023 |
| Predicting hosts based on early SARS-CoV-2 samples and analyzing later world-wide pandemic in 2020 (preprint) Q Guo, M Li, C Wang, J Guo, X Jiang, J Tan, S Wu, P Wang, T Xiao, ... | | 2021 |
| Identify phage hosts from metaviromic short reads based on deep learning and Markov chain model J Tan, Z Fang, S Wu, Q Guo, X Jiang, H Zhu bioRxiv, 2021 | | 2021 |
