Roger Pique-Regi
Roger Pique-Regi
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DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
JT Bell, AA Pai, JK Pickrell, DJ Gaffney, R Pique-Regi, JF Degner, Y Gilad, ...
Genome biology 12, 1-13, 2011
DNase I sensitivity QTLs are a major determinant of human expression variation
JF Degner, AA Pai, R Pique-Regi, JB Veyrieras, DJ Gaffney, JK Pickrell, ...
Nature 482 (7385), 390-394, 2012
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
R Pique-Regi, JF Degner, AA Pai, DJ Gaffney, Y Gilad, JK Pritchard
Genome research 21 (3), 447-455, 2011
DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina
JM Zullo, IA Demarco, R Piqué-Regi, DJ Gaffney, CB Epstein, CJ Spooner, ...
Cell 149 (7), 1474-1487, 2012
Genetic ancestry and natural selection drive population differences in immune responses to pathogens
Y Nédélec, J Sanz, G Baharian, ZA Szpiech, A Pacis, A Dumaine, ...
Cell 167 (3), 657-669. e21, 2016
Does the human placenta express the canonical cell entry mediators for SARS-CoV-2?
R Pique-Regi, R Romero, AL Tarca, F Luca, Y Xu, A Alazizi, Y Leng, ...
Elife 9, e58716, 2020
Clinical significance of tumor-associated inflammatory cells in metastatic neuroblastoma
S Asgharzadeh, JA Salo, L Ji, A Oberthuer, M Fischer, F Berthold, ...
Journal of Clinical Oncology 30 (28), 3525, 2012
Social status alters immune regulation and response to infection in macaques
N Snyder-Mackler, J Sanz, JN Kohn, JF Brinkworth, S Morrow, AO Shaver, ...
Science 354 (6315), 1041-1045, 2016
Deconstructing adipogenesis induced by β3-adrenergic receptor activation with single-cell expression profiling
RB Burl, VD Ramseyer, EA Rondini, R Pique-Regi, YH Lee, ...
Cell metabolism 28 (2), 300-309. e4, 2018
Integrating molecular QTL data into genome-wide genetic association analysis: Probabilistic assessment of enrichment and colocalization
X Wen, R Pique-Regi, F Luca
PLoS genetics 13 (3), e1006646, 2017
Prognostic significance of gene expression profiles of metastatic neuroblastomas lacking MYCN gene amplification
S Asgharzadeh, R Pique-Regi, R Sposto, H Wang, Y Yang, H Shimada, ...
Journal of the National Cancer Institute 98 (17), 1193-1203, 2006
Dissecting the regulatory architecture of gene expression QTLs
DJ Gaffney, JB Veyrieras, JF Degner, PR Roger, AA Pai, GE Crawford, ...
Genome Biology 13 (1), R7, 2012
Bacterial infection remodels the DNA methylation landscape of human dendritic cells
A Pacis, L Tailleux, AM Morin, J Lambourne, JL MacIsaac, V Yotova, ...
Genome research 25 (12), 1801-1811, 2015
Single cell transcriptional signatures of the human placenta in term and preterm parturition
R Pique-Regi, R Romero, AL Tarca, ED Sendler, Y Xu, V Garcia-Flores, ...
Elife 8, e52004, 2019
Causal relationships between NAFLD, T2D and obesity have implications for disease subphenotyping
Z Liu, Y Zhang, S Graham, X Wang, D Cai, M Huang, R Pique-Regi, ...
Journal of hepatology 73 (2), 263-276, 2020
Sparse representation and Bayesian detection of genome copy number alterations from microarray data
R Pique-Regi, J Monso-Varona, A Ortega, RC Seeger, TJ Triche, ...
Bioinformatics 24 (3), 309-318, 2008
Maternal-fetal immune responses in pregnant women infected with SARS-CoV-2
V Garcia-Flores, R Romero, Y Xu, KR Theis, M Arenas-Hernandez, ...
Nature communications 13 (1), 320, 2022
Efficient integrative multi-SNP association analysis via deterministic approximation of posteriors
X Wen, Y Lee, F Luca, R Pique-Regi
The American Journal of Human Genetics 98 (6), 1114-1129, 2016
High-throughput allele-specific expression across 250 environmental conditions
GA Moyerbrailean, AL Richards, D Kurtz, CA Kalita, GO Davis, CT Harvey, ...
Genome research 26 (12), 1627-1638, 2016
QuASAR: quantitative allele-specific analysis of reads
CT Harvey, GA Moyerbrailean, GO Davis, X Wen, F Luca, R Pique-Regi
Bioinformatics 31 (8), 1235-1242, 2015
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