Maria D. Paraskevopoulou, PhD
Maria D. Paraskevopoulou, PhD
Takeda Pharmaceuticals
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DIANA-miRPath v3. 0: deciphering microRNA function with experimental support
IS Vlachos, K Zagganas, MD Paraskevopoulou, G Georgakilas, ...
Nucleic acids research 43 (W1), W460-W466, 2015
DIANA-microT web server v5. 0: service integration into miRNA functional analysis workflows
MD Paraskevopoulou, G Georgakilas, N Kostoulas, IS Vlachos, ...
Nucleic acids research 41 (W1), W169-W173, 2013
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions
D Karagkouni, MD Paraskevopoulou, S Chatzopoulos, IS Vlachos, ...
Nucleic acids research 46 (D1), D239-D245, 2018
Analyzing miRNA–lncRNA interactions
MD Paraskevopoulou, AG Hatzigeorgiou
Long non-coding RNAs: methods and protocols, 271-286, 2016
DIANA-TarBase v7. 0: indexing more than half a million experimentally supported miRNA: mRNA interactions
IS Vlachos, MD Paraskevopoulou, D Karagkouni, G Georgakilas, ...
Nucleic acids research 43 (D1), D153-D159, 2015
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts
MD Paraskevopoulou, IS Vlachos, D Karagkouni, G Georgakilas, ...
Nucleic acids research 44 (D1), D231-D238, 2016
DIANA miRPath v. 2.0: investigating the combinatorial effect of microRNAs in pathways
IS Vlachos, N Kostoulas, T Vergoulis, G Georgakilas, M Reczko, ...
Nucleic acids research 40 (W1), W498-W504, 2012
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs
MD Paraskevopoulou, G Georgakilas, N Kostoulas, M Reczko, ...
Nucleic acids research 41 (D1), D239-D245, 2013
DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts
D Karagkouni, MD Paraskevopoulou, S Tastsoglou, G Skoufos, ...
Nucleic acids research 48 (D1), D101-D110, 2020
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic Acids Research 47 (D1), D221-D229, 2019
RNAcentral: a comprehensive database of non-coding RNA sequences
Nucleic acids research 45 (D1), D128-D134, 2017
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly …
A Papanicolaou, MF Schetelig, P Arensburger, PW Atkinson, JB Benoit, ...
Genome biology 17, 1-31, 2016
microTSS: accurate microRNA transcription start site identification reveals a significant number of divergent pri-miRNAs
G Georgakilas, IS Vlachos, MD Paraskevopoulou, P Yang, Y Zhang, ...
Nature communications 5 (1), 5700, 2014
DIANA-miRGen v3. 0: accurate characterization of microRNA promoters and their regulators
G Georgakilas, IS Vlachos, K Zagganas, T Vergoulis, ...
Nucleic acids research 44 (D1), D190-D195, 2016
miRNA regulons associated with synaptic function
M Paschou, MD Paraskevopoulou, IS Vlachos, P Koukouraki, ...
Public Library of Science 7 (10), e46189, 2012
DIANA‐TarBase and DIANA suite tools: studying experimentally supported microRNA targets
MD Paraskevopoulou, IS Vlachos, AG Hatzigeorgiou
Current protocols in bioinformatics 55 (1), 12.14. 1-12.14. 18, 2016
Characterizing miRNA–lncRNA interplay
D Karagkouni, A Karavangeli, MD Paraskevopoulou, AG Hatzigeorgiou
Long Non-Coding RNAs: Methods and Protocols, 243-262, 2021
microCLIP super learning framework uncovers functional transcriptome-wide miRNA interactions
MD Paraskevopoulou, D Karagkouni, IS Vlachos, S Tastsoglou, ...
Nature communications 9 (1), 3601, 2018
DIANA-mirExTra v2. 0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data
IS Vlachos, T Vergoulis, MD Paraskevopoulou, F Lykokanellos, ...
Nucleic acids research 44 (W1), W128-W134, 2016
Neuronal ELAVL proteins utilize AUF-1 as a co-partner to induce neuron-specific alternative splicing of APP
A Fragkouli, P Koukouraki, IS Vlachos, MD Paraskevopoulou, ...
Scientific Reports 7 (1), 44507, 2017
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