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Rohit Rajgaria
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Advances in protein structure prediction and de novo protein design: A review
CA Floudas, HK Fung, SR McAllister, M Mönnigmann, R Rajgaria
Chemical Engineering Science 61 (3), 966-988, 2006
3362006
A novel high resolution Cα Cα distance dependent force field based on a high quality decoy set
R Rajgaria, SR McAllister, CA Floudas
Proteins: Structure, Function, and Bioinformatics 65 (3), 726-741, 2006
902006
Distance dependent centroid to centroid force fields using high resolution decoys
R Rajgaria, SR McAllister, CA Floudas
Proteins: Structure, Function, and Bioinformatics 70 (3), 950-970, 2008
602008
Contact prediction for beta and alpha‐beta proteins using integer linear optimization and its impact on the first principles 3D structure prediction method ASTRO‐FOLD
R Rajgaria, Y Wei, CA Floudas
Proteins: Structure, Function, and Bioinformatics 78 (8), 1825-1846, 2010
432010
Mutations affecting the oligomerization interface of G-protein-coupled receptors revealed by a novel de novo protein design framework
MS Taylor, HK Fung, R Rajgaria, M Filizola, H Weinstein, CA Floudas
Biophysical journal 94 (7), 2470-2481, 2008
262008
Towards accurate residue–residue hydrophobic contact prediction for α helical proteins via integer linear optimization
R Rajgaria, SR McAllister, CA Floudas
Proteins: Structure, Function, and Bioinformatics 74 (4), 929-947, 2009
252009
Global pairwise sequence alignment through mixed-integer linear programming: a template-free approach
SR McAllister, R Rajgaria, CA Floudas
Optimisation Methods and Software 22 (1), 127-144, 2007
92007
A path selection approach to global pairwise sequence alignment using integer linear optimization†
SR McAllister, R Rajgaria, CA Floudas
Optimization 57 (1), 101-111, 2008
42008
A template-based mixed-integer linear programming sequence alignment model
SR McAllister, R Rajgaria, CA Floudas
Models and Algorithms for Global Optimization, 343-360, 2007
32007
Global pairwise protein sequence alignment via mixed-integer linear optimizationGlobal Pairwise Protein Sequence Alignment via Mixed-Integer Linear Optimization
SR McAllister, R Rajgaria, CA Floudas
Encyclopedia of Optimization, 1427-1434, 2009
2009
High resolution force fields and residue contact prediction models for protein structure prediction
R Rajgaria
Princeton University, 2009
2009
Distance dependent protein force field via linear optimization Distance Dependent Protein Force Field via Linear Optimization
R Rajgaria, SR McAllister, CA Floudas
Encyclopedia of Optimization, 787-792, 2009
2009
A Novel Approach for Residue Contact Prediction in Beta and Alpha/beta Proteins
R Rajgaria, SR McAllister, CA Floudas
The 2008 Annual Meeting, 2008
2008
A New Optimization Based Approach For Protein Residue Contact Prediction
R Rajgaria, SR McAllister, CA Floudas
The 2007 Annual Meeting, 2007
2007
Global Pairwise Sequence Alignment Using Integer Linear Optimization: a Path Selection Approach
SR McAllister, R Rajgaria, CA Floudas
The 2006 Annual Meeting, 2006
2006
A High Resolution Side Chain Centroid Based Distance Dependent Force Field-Effect of Protein Side Chain Interactions
R Rajgaria, SR McAllister, CA Floudas
The 2006 Annual Meeting, 2006
2006
Distance-Dependent Force Field Using a High Resolution Decoy Set
R Rajgaria, SR McAllister, CA Floudas
The 2005 Annual Meeting, 2005
2005
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Articles 1–17