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| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 17046 | 2012 |
| GENCODE: The reference human genome annotation for The ENCODE Project J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ... Genome Research 22 (9), 1760-1774, 2012 | 5318 | 2012 |
| Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals IA Mitchell Guttman, M Garber, C French, MF Lin, D Feldser, M Huarte, ... Nature 458 (7235), 223-227, 2009 | 4860 | 2009 |
| Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-218, 2007 | 2251 | 2007 |
| Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters T Hung, Y Wang, MF Lin, AK Koegel, Y Kotake, GD Grant, HM Horlings, ... Nature genetics 43 (7), 621-629, 2011 | 1378 | 2011 |
| A high-resolution map of human evolutionary constraint using 29 mammals K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011 | 1267 | 2011 |
| Evolution of pathogenicity and sexual reproduction in eight Candida genomes G Butler, MD Rasmussen, MF Lin, MAS Santos, S Sakthikumar, CA Munro, ... Nature 459 (7247), 657-662, 2009 | 1217 | 2009 |
| Identification of functional elements and regulatory circuits by Drosophila modENCODE S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ... Science 330 (6012), 1787, 2010 | 1092 | 2010 |
| PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions MF Lin, I Jungreis, M Kellis Bioinformatics 27 (13), i275, 2011 | 992 | 2011 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011 | 867 | 2011 |
| Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis A Pauli, E Valen, MF Lin, M Garber, NL Vastenhouw, JZ Levin, L Fan, ... Genome Research 22 (3), 577-591, 2012 | 842 | 2012 |
| Distinguishing protein-coding and noncoding genes in the human genome M Clamp, B Fry, M Kamal, X Xie, J Cuff, MF Lin, M Kellis, K Lindblad-Toh, ... Proceedings of the National Academy of Sciences 104 (49), 19428, 2007 | 824 | 2007 |
| Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ... Nature 450 (7167), 219-232, 2007 | 717 | 2007 |
| The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes KD Pruitt, J Harrow, RA Harte, C Wallin, M Diekhans, DR Maglott, ... Genome research 19 (7), 1316-1323, 2009 | 645 | 2009 |
| Variation graph toolkit improves read mapping by representing genetic variation in the reference E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ... Nature biotechnology, 2018 | 586 | 2018 |
| Comparative functional genomics of the fission yeasts N Rhind, Z Chen, M Yassour, DA Thompson, BJ Haas, N Habib, ... Science 332 (6032), 930, 2011 | 547 | 2011 |
| Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone DJ Park, G Dudas, S Wohl, A Goba, SLM Whitmer, KG Andersen, ... Cell 161 (7), 1516-1526, 2015 | 347 | 2015 |
| Evidence of abundant stop codon readthrough in Drosophila and other Metazoa I Jungreis, MF Lin, R Spokony, CS Chan, N Negre, A Victorsen, KP White, ... Genome Research, 2011 | 249 | 2011 |
| Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes MF Lin, JW Carlson, MA Crosby, BB Matthews, C Yu, S Park, KH Wan, ... Genome Research 17 (12), 1823-1836, 2007 | 181 | 2007 |
Manolis KellisProfessor of Computer Science, MIT and Broad InstituteVerified email at mit.edu
