| Beyond modules and hubs: the potential of gene coexpression networks for investigating molecular mechanisms of complex brain disorders C Gaiteri, Y Ding, B French, GC Tseng, E Sibille Genes, brain and behavior 13 (1), 13-24, 2014 | 269 | 2014 |
| An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection X Wang, DD Kang, K Shen, C Song, S Lu, LC Chang, SG Liao, Z Huo, ... Bioinformatics 28 (19), 2534-2536, 2012 | 209 | 2012 |
| Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data S Liu, WH Tsai, Y Ding, R Chen, Z Fang, Z Huo, SH Kim, T Ma, TY Chang, ... Nucleic acids research 44 (5), e47-e47, 2016 | 160 | 2016 |
| Multi-omics profiling of younger Asian breast cancers reveals distinctive molecular signatures Z Kan, Y Ding, J Kim, HH Jung, W Chung, S Lal, S Cho, ... Nature communications 9 (1), 1725, 2018 | 139 | 2018 |
| Plasma biosignature and brain pathology related to persistent cognitive impairment in late-life depression BS Diniz, E Sibille, Y Ding, G Tseng, HJ Aizenstein, F Lotrich, JT Becker, ... Molecular psychiatry 20 (5), 594-601, 2015 | 114 | 2015 |
| Chemotherapy induces dynamic immune responses in breast cancers that impact treatment outcome YH Park, S Lal, JE Lee, YL Choi, J Wen, S Ram, Y Ding, SH Lee, E Powell, ... Nature communications 11 (1), 6175, 2020 | 108 | 2020 |
| Expanding control of the tumor cell cycle with a CDK2/4/6 inhibitor K Freeman-Cook, RL Hoffman, N Miller, J Almaden, J Chionis, Q Zhang, ... Cancer cell 39 (10), 1404-1421. e11, 2021 | 84 | 2021 |
| Gene deletions and amplifications in human hepatocellular carcinomas: correlation with hepatocyte growth regulation MA Nalesnik, G Tseng, Y Ding, GS Xiang, Z Zheng, YP Yu, JW Marsh, ... The American journal of pathology 180 (4), 1495-1508, 2012 | 81 | 2012 |
| Novel fusion transcripts associate with progressive prostate cancer PY Yan, Y Ding, Z Chen, S Liu, A Michalopoulos, R Chen, ZG Gulzar, ... The American journal of pathology 184 (10), 2840-2849, 2014 | 78 | 2014 |
| Testing the predictive value of peripheral gene expression for nonremission following citalopram treatment for major depression JP Guilloux, S Bassi, Y Ding, C Walsh, G Turecki, G Tseng, ... Neuropsychopharmacology 40 (3), 701-710, 2015 | 72 | 2015 |
| Molecular and genetic characterization of depression: overlap with other psychiatric disorders and aging Y Ding, LC Chang, X Wang, JP Guilloux, J Parrish, H Oh, BJ French, ... Complex Psychiatry 1 (1), 1-12, 2015 | 66 | 2015 |
| Sex chromosome complement regulates expression of mood-related genes ML Seney, KI Ekong, Y Ding, GC Tseng, E Sibille Biology of sex differences 4, 1-18, 2013 | 59 | 2013 |
| Cooperation between distinct cancer driver genes underlies intertumor heterogeneity in hepatocellular carcinoma P Molina-Sánchez, MR de Galarreta, MA Yao, KE Lindblad, E Bresnahan, ... Gastroenterology 159 (6), 2203-2220. e14, 2020 | 57 | 2020 |
| OASIS: web-based platform for exploring cancer multi-omics data J Fernandez-Banet, A Esposito, S Coffin, IB Horvath, H Estrella, ... Nature methods 13 (1), 9-10, 2016 | 52 | 2016 |
| Whole-genome methylation sequencing reveals distinct impact of differential methylations on gene transcription in prostate cancer PY Yan, Y Ding, R Chen, SG Liao, BG Ren, A Michalopoulos, ... The American journal of pathology 183 (6), 1960-1970, 2013 | 50 | 2013 |
| Oncogenic activity of miR-650 in prostate cancer is mediated by suppression of CSR1 expression ZH Zuo, PY Yan, Y Ding, S Liu, A Martin, G Tseng, JH Luo The American journal of pathology 185 (7), 1991-1999, 2015 | 46 | 2015 |
| Genome-wide methylation analysis of prostate tissues reveals global methylation patterns of prostate cancer JH Luo, Y Ding, R Chen, G Michalopoulos, J Nelson, G Tseng, PY Yan The American journal of pathology 182 (6), 2028-2036, 2013 | 44 | 2013 |
| Meta-Analytic Framework for Sparse K-Means to Identify Disease Subtypes in Multiple Transcriptomic Studies Z Huo, Y Ding, S Liu, S Oesterreich, G Tseng Journal of the American Statistical Association 111 (513), 27-42, 2016 | 37 | 2016 |
| Identification of a novel gene regulating amygdala-mediated fear extinction O Gunduz-Cinar, E Brockway, L Lederle, T Wilcox, LR Halladay, Y Ding, ... Molecular psychiatry 24 (4), 601-612, 2019 | 36 | 2019 |
| Predisposition to treatment response in major depressive episode: a peripheral blood gene coexpression network analysis R Belzeaux, CW Lin, Y Ding, A Bergon, G Turecki, G Tseng, E Sibille Journal of psychiatric research 81, 119-126, 2016 | 36 | 2016 |
