| Pot: Python optimal transport R Flamary, N Courty, A Gramfort, MZ Alaya, A Boisbunon, S Chambon, ... The Journal of Machine Learning Research 22 (1), 3571-3578, 2021 | 594* | 2021 |
| Quantifying the effect of experimental perturbations at single-cell resolution DB Burkhardt, JS Stanley III, A Tong, AL Perdigoto, SA Gigante, ... Nature biotechnology 39 (5), 619-629, 2021 | 113* | 2021 |
| Trajectorynet: A dynamic optimal transport network for modeling cellular dynamics A Tong, J Huang, G Wolf, D Van Dijk, S Krishnaswamy International conference on machine learning, 9526-9536, 2020 | 80 | 2020 |
| Multiscale PHATE identifies multimodal signatures of COVID-19 M Kuchroo, J Huang, P Wong, JC Grenier, D Shung, A Tong, C Lucas, ... Nature biotechnology 40 (5), 681-691, 2022 | 41* | 2022 |
| A sandbox for prediction and integration of DNA, RNA, and proteins in single cells MD Luecken, DB Burkhardt, R Cannoodt, C Lance, A Agrawal, H Aliee, ... Thirty-fifth conference on neural information processing systems datasets …, 2021 | 39 | 2021 |
| Diffusion earth mover’s distance and distribution embeddings AY Tong, G Huguet, A Natik, K MacDonald, M Kuchroo, R Coifman, ... International Conference on Machine Learning, 10336-10346, 2021 | 21* | 2021 |
| Fixing bias in reconstruction-based anomaly detection with lipschitz discriminators A Tong, G Wolf, S Krishnaswamy 2020 IEEE 30th International Workshop on Machine Learning for Signal …, 2020 | 21 | 2020 |
| Understanding Graph Neural Networks with Generalized Geometric Scattering Transforms M Perlmutter, A Tong, F Gao, G Wolf, M Hirn arXiv preprint arXiv:1911.06253, 2019 | 18* | 2019 |
| Finding archetypal spaces using neural networks D van Dijk, DB Burkhardt, M Amodio, A Tong, G Wolf, S Krishnaswamy 2019 IEEE International Conference on Big Data (Big Data), 2634-2643, 2019 | 16* | 2019 |
| Immune cells and their inflammatory mediators modify β cells and cause checkpoint inhibitor–induced diabetes AL Perdigoto, S Deng, KC Du, M Kuchroo, DB Burkhardt, A Tong, G Israel, ... JCI insight 7 (17), 2022 | 11 | 2022 |
| Conditional flow matching: Simulation-free dynamic optimal transport A Tong, N Malkin, G Huguet, Y Zhang, J Rector-Brooks, K Fatras, G Wolf, ... arXiv preprint arXiv:2302.00482, 2023 | 9 | 2023 |
| Multimodal data visualization and denoising with integrated diffusion M Kuchroo, A Godavarthi, A Tong, G Wolf, S Krishnaswamy 2021 IEEE 31st International Workshop on Machine Learning for Signal …, 2021 | 9 | 2021 |
| Uncovering the folding landscape of RNA secondary structure using deep graph embeddings E Castro, A Benz, A Tong, G Wolf, S Krishnaswamy 2020 IEEE International Conference on Big Data (Big Data), 4519-4528, 2020 | 9* | 2020 |
| Interpretable neuron structuring with graph spectral regularization A Tong, D van Dijk, JS Stanley III, M Amodio, K Yim, R Muhle, J Noonan, ... Advances in Intelligent Data Analysis XVIII: 18th International Symposium on …, 2020 | 9* | 2020 |
| Data-driven learning of geometric scattering modules for gnns A Tong, F Wenkel, K Macdonald, S Krishnaswamy, G Wolf 2021 IEEE 31st International Workshop on Machine Learning for Signal …, 2021 | 8* | 2021 |
| Manifold Interpolating Optimal-Transport Flows for Trajectory Inference G Huguet, DS Magruder, A Tong, O Fasina, M Kuchroo, G Wolf, ... Advances in Neural Information Processing Systems, 2022 | 7 | 2022 |
| Embedding signals on graphs with unbalanced diffusion earth mover’s distance A Tong, G Huguet, D Shung, A Natik, M Kuchroo, G Lajoie, G Wolf, ... ICASSP 2022-2022 IEEE International Conference on Acoustics, Speech and …, 2022 | 5 | 2022 |
| Allocate-on-use space complexity of shared-memory algorithms J Aspnes, B Haeupler, A Tong, P Woelfl International Symposium on Distributed Computing, 2018 | 5 | 2018 |
| Trellis Single-Cell Screening Reveals Stromal Regulation of Patient-Derived Organoid Drug Responses MR Zapatero, A Tong, J Sufi, P Vlckova, FC Rodriguez, C Nattress, X Qin, ... bioRxiv, 2022.10. 19.512668, 2022 | 3 | 2022 |
| Fixing bias in reconstruction-based anomaly detection with lipschitz discriminators A Tong, G Wolf, S Krishnaswamy Journal of Signal Processing Systems, 1-15, 2021 | 3* | 2021 |
Smita KrishnaswamyYale UniversityVerified email at yale.edu
