Vincenzo Bonnici, Ph.D.
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A subgraph isomorphism algorithm and its application to biochemical data
V Bonnici, R Giugno, A Pulvirenti, D Shasha, A Ferro
BMC bioinformatics 14 (7), 1-13, 2013
Enhancing graph database indexing by suffix tree structure
V Bonnici, A Ferro, R Giugno, A Pulvirenti, D Shasha
Pattern Recognition in Bioinformatics: 5th IAPR International Conference …, 2010
miRandola 2017: a curated knowledge base of non-invasive biomarkers
F Russo, S Di Bella, F Vannini, G Berti, F Scoyni, HV Cook, A Santos, ...
Nucleic acids research 46 (D1), D354-D359, 2018
DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference
S Alaimo, V Bonnici, D Cancemi, A Ferro, R Giugno, A Pulvirenti
BMC systems biology 9 (3), 1-11, 2015
Grapes: A software for parallel searching on biological graphs targeting multi-core architectures
R Giugno, V Bonnici, N Bombieri, A Pulvirenti, A Ferro, D Shasha
PloS one 8 (10), e76911, 2013
On the variable ordering in subgraph isomorphism algorithms
V Bonnici, R Giugno
IEEE/ACM Transactions on Computational Biology and Bioinformatics 14 (1 …, 2017
Comprehensive reconstruction and visualization of non-coding regulatory networks in human
V Bonnici, F Russo, N Bombieri, A Pulvirenti, R Giugno
Frontiers in bioengineering and biotechnology 2, 69, 2014
A knowledge base for the discovery of function, diagnostic potential and drug effects on cellular and extracellular miRNAs
F Russo, S Di Bella, V Bonnici, A Laganą, G Rainaldi, M Pellegrini, ...
BMC genomics 15 (3), 1-7, 2014
Informational laws of genome structures
V Bonnici, V Manca
Scientific reports 6 (1), 1-10, 2016
NetMatchStar: an enhanced Cytoscape network querying app
F Rinnone, G Micale, V Bonnici, GD Bader, D Shasha, A Ferro, ...
F1000Research 4 (479), 479, 2015
Arena-Idb: a platform to build human non-coding RNA interaction networks
V Bonnici, G De Caro, G Constantino, S Liuni, D D’Elia, N Bombieri, ...
PanDelos: a dictionary-based method for pan-genome content discovery
V Bonnici, R Giugno, V Manca
BMC Bioinformatics 19 (15), 48-59, 2018
Infogenomics Tools: A Computational Suite for Informational Analyses of Genomes
V Bonnici, V Manca
Journal of Bioinformatics and Proteomics Review 1 (1), 2015
APPAGATO: an APproximate PArallel and stochastic GrAph querying TOol for biological networks
V Bonnici, F Busato, G Micale, N Bombieri, A Pulvirenti, R Giugno
Bioinformatics 32 (14), 2159-2166, 2016
Challenges in gene-oriented approaches for pangenome content discovery
V Bonnici, E Maresi, R Giugno
Briefings in Bioinformatics, 1-11, 2020
Multiri: Fast subgraph matching in labeled multigraphs
G Micale, V Bonnici, A Ferro, D Shasha, R Giugno, A Pulvirenti
arXiv preprint arXiv:2003.11546, 2020
Recurrence distance distributions in computational genomics
V Bonnici, V Manca
American Journal of Bioinformatics and Computational Biology 1, 7-14, 2015
GRAPES-DD: exploiting decision diagrams for index-driven search in biological graph databases
N Licheri, V Bonnici, M Beccuti, R Giugno
BMC bioinformatics 22, 1-24, 2021
Fast subgraph matching strategies based on pattern-only heuristics
A Aparo, V Bonnici, G Micale, A Ferro, D Shasha, A Pulvirenti, R Giugno
Interdisciplinary Sciences: Computational Life Sciences 11, 21-32, 2019
An efficient implementation of a subgraph isomorphism algorithm for GPUs
V Bonnici, R Giugno, N Bombieri
2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018
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