| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 305 | 2023 |
| Multi-domain translation between single-cell imaging and sequencing data using autoencoders K Dai Yang, A Belyaeva, S Venkatachalapathy, K Damodaran, A Katcoff, ... Nature Communications 12 (1), 1-10, 2021 | 115 | 2021 |
| DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer G Baid, DE Cook, K Shafin, T Yun, F Llinares-López, Q Berthet, ... Nature Biotechnology 41 (2), 232-238, 2023 | 59 | 2023 |
| Causal network models of SARS-CoV-2 expression and aging to identify candidates for drug repurposing A Belyaeva, L Cammarata, A Radhakrishnan, C Squires, K Dai Yang, ... Nature communications 12 (1), 1-13, 2021 | 51 | 2021 |
| Network analysis identifies chromosome intermingling regions as regulatory hotspots for transcription A Belyaeva, S Venkatachalapathy, M Nagarajan, GV Shivashankar, ... Proceedings of the National Academy of Sciences 114 (52), 13714-13719, 2017 | 51 | 2017 |
| Direct estimation of differences in causal graphs Y Wang, C Squires, A Belyaeva, C Uhler Advances in Neural Information Processing Systems, 3770-3781, 2018 | 33 | 2018 |
| DCI: learning causal differences between gene regulatory networks A Belyaeva, C Squires, C Uhler Bioinformatics 37 (18), 3067-3069, 2021 | 22 | 2021 |
| Multimodal LLMs for health grounded in individual-specific data A Belyaeva, J Cosentino, F Hormozdiari, CY McLean, NA Furlotte arXiv preprint arXiv:2307.09018, 2023 | 18 | 2023 |
| Application of Quality by Design (QbD) approach to ultrasonic atomization spray coating of drug-eluting stents M McDermott, S Chatterjee, X Hu, A Ash-Shakoor, R Avery, A Belyaeva, ... AAPS PharmSciTech 16 (4), 811-823, 2015 | 11 | 2015 |
| Identifying 3D Genome Organization in Diploid Organisms via Euclidean Distance Geometry A Belyaeva, K Kubjas, LJ Sun, C Uhler SIAM Journal on Mathematics of Data Science, 2021 | 9 | 2021 |
| Anchored Causal Inference in the Presence of Measurement Error B Saeed, A Belyaeva, Y Wang, C Uhler Conference on Uncertainty in Artificial Intelligence, 619-628, 2020 | 8 | 2020 |
| Best: A Tool for Characterizing Sequencing Errors D Liu, A Belyaeva, K Shafin, PC Chang, A Carroll, D Cook bioRxiv, 2022 | 1 | 2022 |
| Knowledge distillation for fast and accurate DNA sequence correction A Belyaeva, J Shor, DE Cook, K Shafin, D Liu, A Töpfer, AM Wenger, ... arXiv preprint arXiv:2211.09862, 2022 | | 2022 |
| Supplementary Information: Network analysis identifies chromosome intermingling regions as regulatory hotspots for transcription A Belyaeva, S Venkatachalapathy, M Nagarajan, GV Shivashankar, ... | | 2017 |
| Network Analysis Identifies Regulatory Hotspots in Regions of Chromosome Interactions A Belyaeva, S Venkatachalapathy, M Nagarajan, GV Shivashankar, ... Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | | 2017 |
| Supplementary Material: Direct Estimation of Differences in Causal Graphs Y Wang, C Squires, A Belyaeva, C Uhler | | |
