Vladimir Kiselev

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Martin HembergBrigham and Women's HospitalVerified email at bwh.harvard.edu
Tallulah Andrews, DPhilAssistant Professor, University of Western OntarioVerified email at sanger.ac.uk
Wolf ReikHead, Epigenetics Programme, Babraham Institute Cambridge, UKVerified email at babraham.ac.uk
Tamir ChandraMRC Unit for Human Genetics, IGMM EdinburghVerified email at igmm.ed.ac.uk
Kristina KirschnerUniversity of Glasgow/ CRUK Beatson InstituteVerified email at glasgow.ac.uk
Mauricio BarahonaImperial College London, Mathematics, Chair in BiomathematicsVerified email at imperial.ac.uk
Michael T. SchaubRWTH Aachen UniversityVerified email at mit.edu
Stijn van DongenSenior Software Developer, Wellcome Sanger Institute, Cambridge UKVerified email at sanger.ac.uk
Felicity AllenWellcome Sanger InstituteVerified email at sanger.ac.uk
Andrew BassettWellcome Trust Sanger Institute, CambridgeVerified email at sanger.ac.uk
Stephen JacksonUniversity of CambridgeVerified email at gurdon.cam.ac.uk
Leopold PartsFaculty at Wellcome Sanger Institute; Senior Researcher (part-time) at University of TartuVerified email at sanger.ac.uk
Vitalii KleshchevnikovPhD fellow at Wellcome Sanger InstituteVerified email at sanger.ac.uk
Michael KosickiLawrence Berkeley National LabVerified email at lbl.gov
Anton KhodakVerified email at fastmail.com
Emmanouil MetzakopianUK Dementia Research Institute_Cambridge UniversityVerified email at cam.ac.uk
Clara Alsinet ArmengolWellcome Sanger InstituteVerified email at sanger.ac.uk
Pietro De AngeliPhD fellow, University Hospital TübingenVerified email at med.uni-tuebingen.de
Human BioMolecular Atlas Program (...https://commonfund.nih.gov/HuBMAPVerified email at Pitt.edu
Andrew B. GoryachevProfessor of Computational Cell Biology, University of EdinburghVerified email at ed.ac.uk

Vladimir Kiselev

Head of Bioinformatics @ Alethiomics

Verified email at alethiomics.com - Homepage

Biotechnology


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SC3: consensus clustering of single-cell RNA-seq data VY Kiselev, K Kirschner, MT Schaub, T Andrews, A Yiu, T Chandra, ... Nature methods 14 (5), 483-486, 2017	967	2017
Challenges in unsupervised clustering of single-cell RNA-seq data VY Kiselev, TS Andrews, M Hemberg Nature Reviews Genetics 20 (5), 273-282, 2019	539	2019
scmap: projection of single-cell RNA-seq data across data sets VY Kiselev, A Yiu, M Hemberg Nature methods 15 (5), 359-362, 2018	348	2018
Predicting the mutations generated by repair of Cas9-induced double-strand breaks F Allen, L Crepaldi, C Alsinet, AJ Strong, V Kleshchevnikov, P De Angeli, ... Nature biotechnology 37 (1), 64-72, 2019	313	2019
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program Caltech-UW TMC Cai Long lcai@ caltech. edu 21 b Shendure Jay 9 Trapnell Cole ... Nature 574 (7777), 187-192, 2019	207	2019
Single-cell multi-omics analysis of the immune response in COVID-19 E Stephenson, G Reynolds, RA Botting, FJ Calero-Nieto, MD Morgan, ... Nature medicine 27 (5), 904-916, 2021	182	2021
PTEN regulates PI (3, 4) P2 signaling downstream of class I PI3K M Malek, A Kielkowska, T Chessa, KE Anderson, D Barneda, P Pir, ... Molecular cell 68 (3), 566-580. e10, 2017	146	2017
Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data TS Andrews, VY Kiselev, D McCarthy, M Hemberg Nature protocols 16 (1), 1-9, 2021	80	2021
Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro L Garcia-Alonso, LF Handfield, K Roberts, K Nikolakopoulou, ... Nature genetics 53 (12), 1698-1711, 2021	71	2021
Proliferation drives aging-related functional decline in a subpopulation of the hematopoietic stem cell compartment K Kirschner, T Chandra, V Kiselev, D Flores-Santa Cruz, IC Macaulay, ... Cell reports 19 (8), 1503-1511, 2017	67	2017
Tia1 dependent regulation of mRNA subcellular location and translation controls p53 expression in B cells JUMT Manuel D. Díaz-Muñoz, Vladimir Yu. Kiselev, Nicolas Le Novère, Tomaz Curk Nature Communications, 530, 2017	42*	2017
Lateral dynamics of proteins with polybasic domain on anionic membranes: a dynamic Monte-Carlo study VY Kiselev, D Marenduzzo, AB Goryachev Biophysical journal 100 (5), 1261-1270, 2011	41	2011
Comparison of visualization tools for single-cell RNAseq data B Cakir, M Prete, N Huang, S Van Dongen, P Pir, VY Kiselev NAR Genomics and Bioinformatics 2 (3), lqaa052, 2020	32	2020
Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench R Chazarra-Gil, S van Dongen, VY Kiselev, M Hemberg Nucleic acids research 49 (7), e42-e42, 2021	24	2021
Perturbations of PIP3 signalling trigger a global remodelling of mRNA landscape and reveal a transcriptional feedback loop VY Kiselev, V Juvin, M Malek, N Luscombe, P Hawkins, NL Novère, ... Nucleic acids research 43 (20), 9663-9679, 2015	20	2015
Publisher Correction: Challenges in unsupervised clustering of single-cell RNA-seq data. VY Kiselev, TS Andrews, M Hemberg Nature reviews. Genetics 20 (5), 310-310, 2019	19	2019
Lateral dynamics of charged lipids and peripheral proteins in spatially heterogeneous membranes: Comparison of continuous and Monte Carlo approaches VY Kiselev, M Leda, AI Lobanov, D Marenduzzo, AB Goryachev The Journal of chemical physics 135 (15), 10B615, 2011	16	2011
The cellular immune response to COVID-19 deciphered by single cell multi-omics across three UK centres E Stephenson, G Reynolds, RA Botting, FJ Calero-Nieto, M Morgan, ... medRxiv, 2021	14	2021
scmap-A tool for unsupervised projection of single cell RNA-seq data VY Kiselev, A Yiu, M Hemberg BioRxiv, 150292, 2017	13	2017
Handbook of statistical genomics DJ Balding, I Moltke, J Marioni John Wiley & Sons, 2019	12	2019

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