| tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes TM Lowe, PP Chan Nucleic acids research 44 (W1), W54-W57, 2016 | 2250 | 2016 |
| tRNAscan-SE: searching for tRNA genes in genomic sequences PP Chan, TM Lowe Gene prediction: methods and protocols, 1-14, 2019 | 1203 | 2019 |
| Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea CB Walker, JR de la Torre, MG Klotz, H Urakawa, N Pinel, DJ Arp, ... Proceedings of the National Academy of Sciences 107 (19), 8818-8823, 2010 | 993 | 2010 |
| GtRNAdb: a database of transfer RNA genes detected in genomic sequence PP Chan, TM Lowe Nucleic acids research 37 (suppl_1), D93-D97, 2009 | 957 | 2009 |
| GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes PP Chan, TM Lowe Nucleic acids research 44 (D1), D184-D189, 2016 | 816 | 2016 |
| tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes PP Chan, BY Lin, AJ Mak, TM Lowe Nucleic Acids Research 49, 9077–9096, 2021 | 638 | 2021 |
| RNAcentral: a hub of information for non-coding RNA sequences Nucleic Acids Research 47 (D1), D221-D229, 2019 | 224 | 2019 |
| RNAcentral 2021: secondary structure integration, improved sequence search and new member databases Nucleic acids research 49 (D1), D212-D220, 2021 | 170 | 2021 |
| RNAcentral: an international database of ncRNA sequences Nucleic acids research 43 (D1), D123-D129, 2015 | 111 | 2015 |
| The UCSC archaeal genome browser: 2012 update PP Chan, AD Holmes, AM Smith, D Tran, TM Lowe Nucleic acids research 40 (D1), D646-D652, 2012 | 102 | 2012 |
| Gene prediction PP Chan, TM Lowe, M Kollmar New York, NY: Humana, 1-14, 2019 | 79 | 2019 |
| IscR Is Essential for Yersinia pseudotuberculosis Type III Secretion and Virulence HK Miller, L Kwuan, L Schwiesow, DL Bernick, E Mettert, HA Ramirez, ... PLoS pathogens 10 (6), e1004194, 2014 | 71 | 2014 |
| Discovery of permuted and recently split transfer RNAs in Archaea PP Chan, AE Cozen, TM Lowe Genome biology 12, 1-11, 2011 | 65 | 2011 |
| R2DT is a framework for predicting and visualising RNA secondary structure using templates BA Sweeney, D Hoksza, EP Nawrocki, CE Ribas, F Madeira, JJ Cannone, ... Nature Communications 12 (1), 3494, 2021 | 60 | 2021 |
| Discovery of a minimal form of RNase P in Pyrobaculum LB Lai, PP Chan, AE Cozen, DL Bernick, JW Brown, V Gopalan, TM Lowe Proceedings of the National Academy of Sciences 107 (52), 22493-22498, 2010 | 55 | 2010 |
| Precision medicine in cats: Novel Niemann‐Pick type C1 diagnosed by whole‐genome sequencing DA Mauler, B Gandolfi, CR Reinero, DP O'Brien, JL Spooner, LA Lyons, ... Journal of veterinary internal medicine 31 (2), 539-544, 2017 | 36 | 2017 |
| Distinct stress‐dependent signatures of cellular and extracellular tRNA‐derived small RNAs G Li, AC Manning, A Bagi, X Yang, P Gokulnath, M Spanos, J Howard, ... Advanced Science 9 (17), 2200829, 2022 | 32 | 2022 |
| Early-Onset Progressive Retinal Atrophy Associated with an IQCB1 Variant in African Black-Footed Cats (Felis nigripes) A Oh, JW Pearce, B Gandolfi, EK Creighton, WK Suedmeyer, M Selig, ... Scientific reports 7 (1), 43918, 2017 | 27 | 2017 |
| Functional curation of the Sulfolobus solfataricus P2 and S. acidocaldarius 98-3 complete genome sequences D Esser, T Kouril, M Zaparty, P Sierocinski, PP Chan, T Lowe, ... Extremophiles 15, 711-712, 2011 | 25 | 2011 |
| A standardized ontology for naming tRNA-derived RNAs based on molecular origin AD Holmes, PP Chan, Q Chen, P Ivanov, L Drouard, N Polacek, MA Kay, ... Nature methods 20 (5), 627-628, 2023 | 23 | 2023 |
Todd LoweProfessor of Biomolecular Engineering, UC Santa Cruz Genomics Institute, UCSC RNA Center, UniversityVerified email at ucsc.edu
