An isotopically coded CID-cleavable biotinylated cross-linker for structural proteomics EV Petrotchenko, JJ Serpa, CH Borchers Molecular & Cellular Proteomics 10 (2), S1-S8, 2011 | 151 | 2011 |
Structural and biochemical characterization of Plasmodium falciparum 12 (Pf12) reveals a unique interdomain organization and the potential for an antiparallel arrangement with Pf41 ML Tonkin, SA Arredondo, BC Loveless, JJ Serpa, KAT Makepeace, ... Journal of Biological Chemistry 288 (18), 12805-12817, 2013 | 73 | 2013 |
MeCP2 binds to nucleosome free (linker DNA) regions and to H3K9/H3K27 methylated nucleosomes in the brain AA Thambirajah, MK Ng, LJ Frehlick, A Li, JJ Serpa, EV Petrotchenko, ... Nucleic acids research 40 (7), 2884-2897, 2012 | 69 | 2012 |
Use of proteinase K nonspecific digestion for selective and comprehensive identification of interpeptide cross-links: application to prion proteins EV Petrotchenko, JJ Serpa, DB Hardie, M Berjanskii, BP Suriyamongkol, ... Molecular & Cellular Proteomics 11 (7), M111. 013524-1-M111. 013524-13, 2012 | 63 | 2012 |
Mass spectrometry-based structural proteomics JJ Serpa, CE Parker, EV Petrotchenko, J Han, J Pan, CH Borchers European Journal of Mass Spectrometry 18 (2), 251-267, 2012 | 61 | 2012 |
Use of a combination of isotopically coded cross-linkers and isotopically coded N-terminal modification reagents for selective identification of inter-peptide crosslinks EV Petrotchenko, JJ Serpa, CH Borchers Analytical chemistry 82 (3), 817-823, 2010 | 38 | 2010 |
The prolyl isomerase, FKBP25, interacts with RNA-engaged nucleolin and the pre-60S ribosomal subunit G Gudavicius, D Dilworth, JJ Serpa, N Sessler, EV Petrotchenko, ... Rna 20 (7), 1014-1022, 2014 | 33 | 2014 |
The prolyl isomerase FKBP25 regulates microtubule polymerization impacting cell cycle progression and genomic stability D Dilworth, G Gudavicius, X Xu, AKJ Boyce, C O’Sullivan, JJ Serpa, ... Nucleic Acids Research 46 (5), 2459-2478, 2018 | 27 | 2018 |
Using multiple structural proteomics approaches for the characterization of prion proteins JJ Serpa, AP Patterson, J Pan, J Han, DS Wishart, EV Petrotchenko, ... Journal of proteomics 81, 31-42, 2013 | 25 | 2013 |
Analysis of protein structure by cross-linking combined with mass spectrometry EV Petrotchenko, KAT Makepeace, JJ Serpa, CH Borchers Shotgun Proteomics: Methods and Protocols, 447-463, 2014 | 23 | 2014 |
14N15N DXMSMS Match program for the automated analysis of LC/ESI-MS/MS crosslinking data from experiments using 15N metabolically labeled proteins EV Petrotchenko, JJ Serpa, KAT Makepeace, NI Brodie, CH Borchers Journal of proteomics 109, 104-110, 2014 | 21 | 2014 |
The basic tilted helix bundle domain of the prolyl isomerase FKBP25 is a novel double-stranded RNA binding module D Dilworth, SK Upadhyay, P Bonnafous, AB Edoo, S Bourbigot, ... Nucleic Acids Research 45 (20), 11989-12004, 2017 | 18 | 2017 |
Using isotopically-coded hydrogen peroxide as a surface modification reagent for the structural characterization of prion protein aggregates JJ Serpa, KAT Makepeace, TH Borchers, DS Wishart, EV Petrotchenko, ... Journal of proteomics 100, 160-166, 2014 | 15 | 2014 |
“Out-gel” tryptic digestion procedure for chemical cross-linking studies with mass spectrometric detection EV Petrotchenko, JJ Serpa, AN Cabecinha, M Lesperance, CH Borchers Journal of Proteome Research 13 (2), 527-535, 2014 | 14 | 2014 |
Structure of prion β‐oligomers as determined by short‐distance crosslinking constraint‐guided discrete molecular dynamics simulations JJ Serpa, KI Popov, EV Petrotchenko, NV Dokholyan, CH Borchers Proteomics 21 (21-22), 2000298, 2021 | 10 | 2021 |
Expression and purification of the full murine NPM2 and study of its interaction with protamines and histones K Ellard, JJ Serpa, EV Petrotchenko, CH Borchers, J Ausió Biochemistry and Biophysics Reports 6, 165-171, 2016 | 7 | 2016 |
Comprehensive identification of disulfide bonds using non-specific proteinase K digestion and CID-cleavable crosslinking analysis methodology for Orbitrap LC/ESI-MS/MS data KAT Makepeace, JJ Serpa, EV Petrotchenko, CH Borchers Methods 89, 74-78, 2015 | 5 | 2015 |
Cross‐linking Applications in Structural Proteomics EV Petrotchenko, JJ Serpa, CH Borchers Proteomics for Biological Discovery, 175-196, 2019 | | 2019 |
STRUCTURE DETERMINATION OF NEURODEGENERATIVE MISFOLDED PROTEIN AGGREGATES BY SHORT-DISTANCE CROSSLINKING CONSTRAING-GUIDED DISCRETE MOLECULAR DYNAMICS (CL-DMD) EVI Petrotchenko, JJ Serpa, KI Popov, N Dokholyan, CH Borchers VII Съезд Вавиловского общества генетиков и селекционеров, посвященный 100 …, 2019 | | 2019 |
Structure of prion β-oligomers as determined by structural proteomics JJ Serpa | | 2017 |