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Samuel Lampa
Samuel Lampa
Bioinformatician at Karolinska University Hospital
Verified email at ki.se
Title
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Cited by
Year
SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population
A Ameur, J Dahlberg, P Olason, F Vezzi, R Karlsson, M Martin, J Viklund, ...
European Journal of Human Genetics 25 (11), 1253-1260, 2017
1832017
Towards reproducible computational drug discovery
N Schaduangrat, S Lampa, S Simeon, MP Gleeson, O Spjuth, ...
Journal of cheminformatics 12, 1-30, 2020
1322020
Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data
S Lampa, M Dahlö, PI Olason, J Hagberg, O Spjuth
Gigascience 2 (1), 2047-217X-2-9, 2013
852013
Experiences with workflows for automating data-intensive bioinformatics
O Spjuth, E Bongcam-Rudloff, GC Hernández, L Forer, M Giovacchini, ...
Biology direct 10, 1-12, 2015
842015
PhenoMeNal: processing and analysis of metabolomics data in the cloud
K Peters, J Bradbury, S Bergmann, M Capuccini, M Cascante, P de Atauri, ...
GigaScience 8 (2), giy149, 2019
692019
A confidence predictor for logD using conformal regression and a support-vector machine
M Lapins, S Arvidsson, S Lampa, A Berg, W Schaal, J Alvarsson, O Spjuth
Journal of cheminformatics 10, 1-10, 2018
492018
Large-scale ligand-based predictive modelling using support vector machines
J Alvarsson, S Lampa, W Schaal, C Andersson, JES Wikberg, O Spjuth
Journal of cheminformatics 8, 1-9, 2016
442016
SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines
S Lampa, M Dahlö, J Alvarsson, O Spjuth
GigaScience 8 (5), giz044, 2019
402019
Linking the resource description framework to cheminformatics and proteochemometrics
EL Willighagen, J Alvarsson, A Andersson, M Eklund, S Lampa, M Lapins, ...
Journal of Biomedical Semantics 2, 1-24, 2011
382011
Towards agile large-scale predictive modelling in drug discovery with flow-based programming design principles
S Lampa, J Alvarsson, O Spjuth
Journal of cheminformatics 8, 1-12, 2016
352016
Predicting off-target binding profiles with confidence using conformal prediction
S Lampa, J Alvarsson, S Arvidsson Mc Shane, A Berg, E Ahlberg, ...
Frontiers in pharmacology 9, 1256, 2018
302018
Software engineering for scientific big data analysis
BA Grüning, S Lampa, M Vaudel, D Blankenberg
GigaScience 8 (5), giz054, 2019
262019
Existing workflow systems.
P Amstutz
(No Title), 2021
172021
RDFIO: extending Semantic MediaWiki for interoperable biomedical data management
S Lampa, E Willighagen, P Kohonen, A King, D Vrandečić, R Grafström, ...
Journal of biomedical semantics 8, 1-13, 2017
82017
SWI-Prolog as a Semantic Web tool for semantic querying in Bioclipse: Integration and performance benchmarking
S Lampa
82010
Approaches for containerized scientific workflows in cloud environments with applications in life science
O Spjuth, M Capuccini, M Carone, A Larsson, W Schaal, JA Novella, ...
Preprints, 2020
62020
Existing workflow systems, 2021
P Amstutz, M Mikheev, MR Crusoe, N Tijanić, S Lampa
Reference Source, 0
6
UPPNEX-A solution for Next Generation Sequencing data management and analysis
S Lampa, J Hagberg, O Spjuth
EMBnet. journal 17 (B), 44, 2011
22011
Approaches for containerized scientific workflows in cloud environments with applications in life science
O Spjuth, M Capuccini, M Carone, A Larsson, W Schaal, JA Novella, ...
F1000Research 10, 513, 2021
12021
SciPipe—Turning Scientific Workflows into Computer Programs
S Lampa, M Dahlö, J Alvarsson, O Spjuth
Computing in Science & Engineering 21 (3), 109-113, 2019
2019
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Articles 1–20