Luis Zapata
Luis Zapata
ICR fellow, Center For Evolution And Cancer, ICR
Verified email at
Cited by
Cited by
The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana
E Wijnker, G Velikkakam James, J Ding, F Becker, JR Klasen, V Rawat, ...
Elife 2, e01426, 2013
Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms
L Zapata, J Ding, EM Willing, B Hartwig, D Bezdan, WB Jiao, V Patel, ...
Proceedings of the National Academy of Sciences 113 (28), E4052-E4060, 2016
Geospatial immune variability illuminates differential evolution of lung adenocarcinoma
K AbdulJabbar, SEA Raza, R Rosenthal, M Jamal-Hanjani, S Veeriah, ...
Nature medicine 26 (7), 1054-1062, 2020
Identification of gene mutations and fusion genes in patients with Sézary syndrome
A Prasad, R Rabionet, B Espinet, L Zapata, A Puiggros, C Melero, A Puig, ...
Journal of Investigative Dermatology 136 (7), 1490-1499, 2016
Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome
L Zapata, O Pich, L Serrano, FA Kondrashov, S Ossowski, MH Schaefer
Genome biology 19 (1), 1-17, 2018
Analysis of a long-term outbreak of XDR Pseudomonas aeruginosa: a molecular epidemiological study
M Willmann, D Bezdan, L Zapata, H Susak, W Vogel, K Schröppel, J Liese, ...
Journal of Antimicrobial Chemotherapy 70 (5), 1322-1330, 2015
Evolutionary dynamics of neoantigens in growing tumors
E Lakatos, MJ Williams, RO Schenck, WCH Cross, J Househam, L Zapata, ...
Nature genetics 52 (10), 1057-1066, 2020
Subclonal reconstruction of tumors by using machine learning and population genetics
G Caravagna, T Heide, MJ Williams, L Zapata, D Nichol, K Chkhaidze, ...
Nature genetics 52 (9), 898-907, 2020
Sporadic and reversible chromothripsis in chronic lymphocytic leukemia revealed by longitudinal genomic analysis
L Bassaganyas, S Beà, G Escaramis, C Tornador, I Salaverria, L Zapata, ...
Leukemia 27 (12), 2376-2379, 2013
SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss
A Di Genova, A Aravena, L Zapata, M Gonzalez, A Maass, P Iturra
Database 2011, 2011
Jitterbug: somatic and germline transposon insertion detection at single-nucleotide resolution
E Hénaff, L Zapata, JM Casacuberta, S Ossowski
BMC genomics 16 (1), 1-16, 2015
Mapping the breast cancer metastatic cascade onto ctDNA using genetic and epigenetic clonal tracking
GD Cresswell, D Nichol, I Spiteri, H Tari, L Zapata, T Heide, CC Maley, ...
Nature communications 11 (1), 1446, 2020
Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios
MJ Williams, L Zapata, B Werner, CP Barnes, A Sottoriva, TA Graham
Elife 9, e48714, 2020
Reply to ‘Neutral tumor evolution?’
T Heide, L Zapata, MJ Williams, B Werner, G Caravagna, CP Barnes, ...
Nature genetics 50 (12), 1633-1637, 2018
The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues
F Muyas, L Zapata, R Guigó, S Ossowski
Genome Medicine 12, 1-14, 2020
Allele balance bias identifies systematic genotyping errors and false disease associations
F Muyas, M Bosio, A Puig, H Susak, L Domènech, G Escaramis, L Zapata, ...
Human mutation 40 (1), 115-126, 2019
Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells
M Tarbier, SD Mackowiak, J Frade, S Catuara-Solarz, I Biryukova, ...
Nature communications 11 (1), 5445, 2020
Single‐cell genetic analysis of clonal dynamics in colorectal adenomas indicates CDX2 gain as a predictor of recurrence
D Fiedler, K Heselmeyer‐Haddad, D Hirsch, LS Hernandez, I Torres, ...
International journal of cancer 144 (7), 1561-1573, 2019
Signatures of positive selection reveal a universal role of chromatin modifiers as cancer driver genes
L Zapata, H Susak, O Drechsel, MR Friedländer, X Estivill, S Ossowski
Scientific Reports 7 (1), 13124, 2017
Model-based tumor subclonal reconstruction
G Caravagna, T Heide, M Williams, L Zapata, D Nichol, K Chkhaidze, ...
BioRxiv, 586560, 2019
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