Luis Zapata

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Stephan OssowskiInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, GermanyVerified email at crg.eu
Andrea SottorivaHuman TechnopoleVerified email at fht.org
Trevor A GrahamDirector, Centre for Evolution and Cancer, ICR, LondonVerified email at icr.ac.uk
Benjamin WernerBarts Cancer Institute, Queen Mary University LondonVerified email at qmul.ac.uk
Chris P BarnesUniversity College LondonVerified email at ucl.ac.uk
Marc J WilliamsMemorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Xavier Estivill MD PhDqGenomics (Quantitative Genomics Laboratories)Verified email at qgenomics.com
Korbinian SchneebergerLudwig-Maximilians-University Munich (LMU); Max Planck Institute for Plant Breeding ResearchVerified email at lmu.de
Geo Velikkakam JamesTeam Leader Bioinformatics, Rijk Zwaan R&D FijnaartVerified email at rijkzwaan.nl
Giulio CaravagnaCancer Data Science Laboratory, University of TriesteVerified email at units.it
Daniela BezdanVerified email at med.uni-tuebingen.de
William CrossPostdoctoral Research Fellow, University College LondonVerified email at ucl.ac.uk
Daniel NicholEvolutionary Genomics and Modelling, Institute of Cancer Research, UKVerified email at icr.ac.uk
Dr George D CresswellInstitute of Cancer ResearchVerified email at icr.ac.uk
Khalid AbdulJabbarPostdoc Fellow, Institute of Cancer Research, London, UKVerified email at icr.ac.uk
Matthias WillmannInstitute of Medicial Microbiology and Hygiene, University of Tuebingen, GermanyVerified email at med.uni-tuebingen.de
Cristian Tornador, Tornador CPhD in Biomedicine - Bioinformatic, Universitat Pompeu FabraVerified email at upf.edu
Pedro G. FerreiraDepartment of Computer Science, Faculty of Sciences University of Porto; INESC-TECVerified email at fc.up.pt
Laia BassaganyasPostdoctoral Researcher - IRCM MontpellierVerified email at inserm.fr
Alejandro MaassCenter for Mathematical Modeling, University of ChileVerified email at dim.uchile.cl

Luis Zapata

ICR fellow, Center For Evolution And Cancer, ICR

Verified email at icr.ac.uk

Genomics Bioinformatics Evolutionary Biology Cancer


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The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana E Wijnker, G Velikkakam James, J Ding, F Becker, JR Klasen, V Rawat, ... Elife 2, e01426, 2013	203	2013
Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms L Zapata, J Ding, EM Willing, B Hartwig, D Bezdan, WB Jiao, V Patel, ... Proceedings of the National Academy of Sciences 113 (28), E4052-E4060, 2016	167	2016
Geospatial immune variability illuminates differential evolution of lung adenocarcinoma K AbdulJabbar, SEA Raza, R Rosenthal, M Jamal-Hanjani, S Veeriah, ... Nature medicine 26 (7), 1054-1062, 2020	153	2020
Identification of gene mutations and fusion genes in patients with Sézary syndrome A Prasad, R Rabionet, B Espinet, L Zapata, A Puiggros, C Melero, A Puig, ... Journal of Investigative Dermatology 136 (7), 1490-1499, 2016	84	2016
Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome L Zapata, O Pich, L Serrano, FA Kondrashov, S Ossowski, MH Schaefer Genome biology 19 (1), 1-17, 2018	77	2018
Analysis of a long-term outbreak of XDR Pseudomonas aeruginosa: a molecular epidemiological study M Willmann, D Bezdan, L Zapata, H Susak, W Vogel, K Schröppel, J Liese, ... Journal of Antimicrobial Chemotherapy 70 (5), 1322-1330, 2015	60	2015
Evolutionary dynamics of neoantigens in growing tumors E Lakatos, MJ Williams, RO Schenck, WCH Cross, J Househam, L Zapata, ... Nature genetics 52 (10), 1057-1066, 2020	59	2020
Subclonal reconstruction of tumors by using machine learning and population genetics G Caravagna, T Heide, MJ Williams, L Zapata, D Nichol, K Chkhaidze, ... Nature genetics 52 (9), 898-907, 2020	57	2020
Sporadic and reversible chromothripsis in chronic lymphocytic leukemia revealed by longitudinal genomic analysis L Bassaganyas, S Beà, G Escaramis, C Tornador, I Salaverria, L Zapata, ... Leukemia 27 (12), 2376-2379, 2013	44	2013
SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss A Di Genova, A Aravena, L Zapata, M Gonzalez, A Maass, P Iturra Database 2011, 2011	38	2011
Jitterbug: somatic and germline transposon insertion detection at single-nucleotide resolution E Hénaff, L Zapata, JM Casacuberta, S Ossowski BMC genomics 16 (1), 1-16, 2015	37	2015
Mapping the breast cancer metastatic cascade onto ctDNA using genetic and epigenetic clonal tracking GD Cresswell, D Nichol, I Spiteri, H Tari, L Zapata, T Heide, CC Maley, ... Nature communications 11 (1), 1446, 2020	34	2020
Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios MJ Williams, L Zapata, B Werner, CP Barnes, A Sottoriva, TA Graham Elife 9, e48714, 2020	25	2020
Reply to ‘Neutral tumor evolution?’ T Heide, L Zapata, MJ Williams, B Werner, G Caravagna, CP Barnes, ... Nature genetics 50 (12), 1633-1637, 2018	24	2018
The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues F Muyas, L Zapata, R Guigó, S Ossowski Genome Medicine 12, 1-14, 2020	22	2020
Allele balance bias identifies systematic genotyping errors and false disease associations F Muyas, M Bosio, A Puig, H Susak, L Domènech, G Escaramis, L Zapata, ... Human mutation 40 (1), 115-126, 2019	22	2019
Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells M Tarbier, SD Mackowiak, J Frade, S Catuara-Solarz, I Biryukova, ... Nature communications 11 (1), 5445, 2020	19	2020
Single‐cell genetic analysis of clonal dynamics in colorectal adenomas indicates CDX2 gain as a predictor of recurrence D Fiedler, K Heselmeyer‐Haddad, D Hirsch, LS Hernandez, I Torres, ... International journal of cancer 144 (7), 1561-1573, 2019	18	2019
Signatures of positive selection reveal a universal role of chromatin modifiers as cancer driver genes L Zapata, H Susak, O Drechsel, MR Friedländer, X Estivill, S Ossowski Scientific Reports 7 (1), 13124, 2017	17	2017
Model-based tumor subclonal reconstruction G Caravagna, T Heide, M Williams, L Zapata, D Nichol, K Chkhaidze, ... BioRxiv, 586560, 2019	7	2019

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